dhx34 (dhx34,LOC102778731)


Basic Information

Item Value
gene id dhx34
gene name dhx34,LOC102778731
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25510323 ~ 25521145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679768.1
TTTTAGCTGTAGTTCAGTAAATATAGCTGCTGTATAAAACtgtagatataaataaataacctctATTTCTGTCAAACAGAGCTTTCTCTGGTCCGGTTCTGGTTCGGTAAGGCTGCGCGTTAGAATTATACAGCTAACTGTTATATAAAGTAATctaattatatatcttattattattactcttTTCGATTAGCTAGATGGCTAGCTACATTAGTTAGTTCGATAGATAGTTTAATAATGCTTTAGTGAATCTCGGTCCAGTTGGTCTTACTGGTTACTGTGTTAGATTGTATGAGTCTGTGTTCAGAGAGGAGCTGCGGATGAGCGGGAGGCGAGCCGAGCCCCGGGACTGGGACTGGAACAGCCCGCGGTGCCGAGCGGAGCTGGACCACATTTTTTTCCGGCAGCATGATTACATCCGGGCCAACAGCCCCGAACACGCAGAGTTCTGGACTTTCTTCGAGCGCTTCCAGCGGTTCCGAGCCAAAAGAGAGCTCTCCgggtccagcagcagcagaggccgGGCCGAGCCGCAGGACGGTAAAGCCCGGAACCGGAGCGGAACAGGCGGACCGGATCTCGGGCTTCCTAAGGAGTACGATGCGCGGTACCGGATCAGCGTGTCGGTGTGCAGCAGGGACGTGGAGGACGGGTTCGGAAGCTCAGGTCACCGGCGGTCCGGCGGGGAGTCTTCCGGACCGGGCCGGGAACAGGTCTCAGAGTGCCGCCTTGCTCTGCTCCACTTTCTGGACTTCGCTCAGAAACAGAGCTTTAGTAAAGTGCTGAAACTCCGGCGCGAACAGAGGAACCTGCCCATCTTCCAGTACCgggagcggctggtggagctgGTGAGGAGGAACccggtggtggtggtggcgggAGACACGGGCTGCGGAAAGTCCACCCAGGCGCCCCAGTACCTGCTCGGCTCCGGATTTAGTAACATCGCCTGTACCCAGCCCCGCCGCATCGCCTGCATCTCCCTCGCCAAGCGGGTCAGCTTCGAGACCCTCAACCAGTTCGGATCCAAAGTCGGCTACCAGATCCGCTTTGAGACAAGTCGAACCCCCTCAACCAAGCTGCTGTTCCTGACTGAGGGTCTGCTCCTCCGGCAGATCCAGCAGGATGCTGCACTGTCCCAGTATCAGGTTCTGATCGTGGACGAGGTTCATGAGAGGCATCTGCACTGTGACTTCCTGCTGGGTGTCCTGCGCTCTCTGATCGCGAGGCGGCCAGACCTGCGGCTGGTTCTGATGTCCGCTACCATCAACATCAAGCTTTTCTCTGGTTACTTTAACCATGCCCCTGTGCTGCAGGTACCAGGCAGACTCTTCCCCATTCAGgtgatttATCAGCCGATCCCACCAGAGGAGCAGGTCTCTAAATCAGAGAAGCTGGACCCGCGCCCTTACCTGCGAGTTCTACAGGGGATTGACCAGCGCTATCCGGCAGAGGAGCGAGGAgacctgctgctgttcctgaGTGGAGTAGCTGAGATTTCCACTATCATGGAGGCTTGCCAGACATATGCCACCCACACCAACCGCTGGATCGTCCTGCCCCTGCACAGCACGCTGTCCCTGACCCAGCAGGACAAGGTGTTTGACATTGCTCCCCCCGGAGTCAGGAAATGCATAATTTCAACAAACATAGCTGAGACATCAGTGACCATTGATGGGGTGCGGTTTGTAGTTGACTCAGGTAAAGTAAAGGAGATGAGTTTTGACCCGAAGGCAAAGATGCAAAGACTTCAGGAGTTCTGGATTAGTCGGGCCAGCTCAGAGCAGAGAAAGGGACGTGCAGGAAGAACCGGACCAGGAGTCTGCTACCGGCTCTATGCCGAGTCAGACTACGAGGCCTTTGCCCCGTACCCAGTCCCTGAGATCCACAGGGTGGCACTAGATTCACTAGTGCTCCAGATGAAGAGTATGGGTCTGGGTGatcctctctcttttgcttttatTGACCCACCGCCCACTTCCAGCATTCAGACAGCAGTGACGTATCTTAAGGAACAGGGGGCGCTAGAAGCCCGTGGGGAGCTTACCCCTATTGGAACGCTGTTGTCGCAGCTGCCAGTGGACGTGGTTATTGgtaaaatgCTGGTTCTGGGTTCGCTGTTTAGTCTGGTTGAGCCGGTGTTGACCATAGCTGCAGCTCTCAGTGTTCAGTCGCCATTTCTGCGCAGCGCTCAGCATAACCCTGACTGCTCCACTGCGCGCCAGCCCCTGAACAGTGACCTGGGAGACCCCTTCACCCTGCTCAACACCTTCAACGCGTGGGTGCAGGTGAAAGGGGAAAGAGGGGGTGGGTCAAGGAAGTGGTGTAAGAGGAGGGGACTGGAGGAGCAGCGGCTGTACGAGATGGCCAATCTGAGACGACAGTTTAAGGAGTTATTGAGGAGTCACGGCCTATTAGAGACAGAGGAGCCGCCAGCTCCGTCGGCACAGGGCCGGACAGAGCGGCGGGAGAGGCTGACCGAGCGCAGCCGGCTGTACCAGCTGAAGAGGGAGCATGAGCTGCAGGACGGCGGCCGCAGGAAAGTGCTGCGTCTGGACGAAGGCCAGGAGGAAGAGTCCTGCTCCGGGTCAGACAATGAGGGAAGCGGATCtgggaaaaaagacaaaaactctATGGGGCGAGACGTGGACATACAGGAAGTGAAGTTTAAACTGCGTCATAACGTGACCAAGCTTCAGGAAGCTGCATACGTCAGTGCGGACCTGTCGTCTCGGCAGCTGGCACTGCTCAGATTGGTGCTGTGCCGCGGTCTGTACCCACAGCTGGCACTGCCTGATGAACATAATTCCACTCGCAAAGACTCAGAGCAGGTGTTTCATACTCGTAATAAGCAGGGAGTCATGATCCACCCGACCAGTGTGTTCGCCATCGACCCGGAGGTGCTGCATGTTTCCGAGAATGAGACCGGAGAGTTTGGAGCTGATAGGGGGGAGAGTAACAGGCACCAGCTGCTGGCGTTTGTGACGCTGCTGGAAACCAACAAGCCATACGTGTCCAGCTGCGTCCGAGTCCCGGCTCTGCAGGCTCTGATACTGGTGGCGAACAGTGTGGACAGTAATGCAGACTGTACTCGGCTGGTGGTGGACGGTTGGCTGGAGCTGTGCGTGTCTGATGGCGAGGCAGCACTGAGGGCTCTCTCCTCTGCCCTGAAGCTGAGGGCTGAGTGGGAACGACTGCTCCAGGCCCAGCTCGGCCACACGGGTTCAGGTTCCACCGCAGGTCTTGGGTTCTCCGGGCCAAAACCAGGTCGACGCGAGCTGGAGAAACTGGCTGAGGGACTTGTTCGCTTTCTGGTCTACAATGagGTGACTTACAGTCTGAGACGGCTGACCGCACTTCAGACTCAGAACCTGTACATTGGACCCCAGCTGAACCCGGAGCTGTCACTCCCTCCACTGTTTCCTGGGATGAAGGCAGAACCGGATCCAGTAAAAGGAGGCCTGCGGGTTACCAGCTACTTCACCTACAACTGCCTCTGTgactCTAAAGACCTGTACAGTGAATGTTTACGGACGTTTTGGAGCTGCCCTCACTGTGACCTGCACATGCCCCTGACCCCACTGGAACGCATGCAGCACGAGGCCACCTGCAGATCAGCAGAGGAACAGCAGCCAGAAGACGACCCCACAGATGACTCACCACAGGCTGCGTCCACATCTGCTCTGACTCGACTCTACCACTGTGACCTCTGTAACAAAGACTTGACACTCACCTCCACGCAGATCCTCAAACACAAGCGCCAGCACCAGCCCTGACCTCTGTGCCAGCCTTCTGCCCTGACCTGACCCCTGCGCAAGACTCCTACCCTGACCCCTGCCAGCCTCCAGGAGTTTCCAGGGGAAGCTTGTAATTGAGAAGCTTGGTGCCCGTGTGGGGCTCATACGGGCACAATGGTTCCGCACGCCATACAAAAACACAGGCTGGATTACCTGGCTATGCTGTGCGTGCGTTACCATGTGATGTGCCATGTGCCACATGTGACTTGGGCCCAGTGTTTCAGCCTCAAACCCAGGTGAACCCTGTGAGGTGAAAGATATAATTGTGAACTGATGGAGAGTTAAGCTAAAATATTTGCTCcgtttaaataaagaaatatttatttgtttgactAAATTTCTTACAAGAA

Function

symbol description
dhx34 Predicted to enable RNA binding activity. Involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human DHX34 (DExH-box helicase 34).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20101 DHX34; ATP-dependent RNA helicase DHX34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679768.1 True 4147 mRNA 0.55 16 25510323 25521145

Neighbor

gene id symbol gene type direction distance location
LOC103024914 NA coding upstream 156 25504077 ~ 25510167 (+)
LOC103023437 NA coding upstream 9714 25483944 ~ 25500609 (+)
cxcr5 NA coding upstream 429897 25068911 ~ 25080426 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 895394 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1560435 23943693 ~ 23949888 (+)
bicra gltscr1,LOC108413251 coding downstream 28283 25549428 ~ 25564612 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding downstream 45147 25566292 ~ 25576097 (+)
LOC103039536 napab,napa,LOC103039536,LOC108413256,LOC107668964,LOC107758075,LOC108264617,LOC103368726 coding downstream 60014 25581159 ~ 25586694 (+)
LOC111194838 LOC108435311 coding downstream 72241 25593386 ~ 25594254 (+)
LOC103041999 LOC108435342,LOC107709801,LOC107691146 coding downstream 111439 25632584 ~ 25643495 (+)
G160543 NA non-coding upstream 90384 25417643 ~ 25419939 (+)
G160518 NA non-coding upstream 129830 25323403 ~ 25380493 (+)
G160384 NA non-coding upstream 461745 25046937 ~ 25048578 (+)
G160383 NA non-coding upstream 463409 25046714 ~ 25046914 (+)
G160369 NA non-coding upstream 602768 24907229 ~ 24907555 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 19264 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 73807 25594952 ~ 25599301 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding downstream 90571 25611716 ~ 25615298 (+)
G160647 NA non-coding downstream 183372 25704517 ~ 25706252 (+)
G160654 NA non-coding downstream 217642 25738787 ~ 25739361 (+)
G160306 NA other upstream 1390498 24119129 ~ 24119825 (+)
G160134 NA other upstream 2656242 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3357538 22147844 ~ 22152785 (+)
fam174b NA other upstream 4435750 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4498529 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 802675 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1096117 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1384099 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1588526 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2263751 27784896 ~ 27796504 (+)

Expression


Co-expression Network