LOC103024914


Basic Information

Item Value
gene id LOC103024914
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25504077 ~ 25510167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679770.1
GACAGAAGTAATAAACTGTGTAATACTTCTTGCTTACTGTTGTTGCTATGTAAGGCGGCCATATTGGATTCTAAACTCAGGGTTGGTGAGGCTCTCCCGACTTTCCCAGTAAGAAATTTGTGATGTAGAAGTTTTCCAGTTCAAATTTCCCGCTAAAAACTAGGAAATTCTGATATCAAATGGAAGTTCAAATGGAATGAAACATAATTCTCCAGTTCTTACAGTTATCATTCCAGCAGGTGTGTGATTCTTGTGAATCATTAatggtaacaggaatgagtgattTTCGATAATGGGTAATGTCTCTGGTTACTGTGTTCTGTATGCTGAGTTCTTCTCCACAGGTTCTGAGTCTGAATGCTCTGACTTCCTCCGTATGACTCCGCCCTCCCCCTCCACTGTCCAGCTGCTGAAGTTCAGCGTGCAGAGTCTCTGTGGTTCTGCAGTCAGCCTTCACGATGATGTTCCACACCACGTCTGGAACCCTGACCTACCCACCACTGTGATCATACCAGGGAAAAGAATGGCTCGAGTTCAGCCAGCCTGGGTCAGAACTATGGCCCAGGAGTTGCTGGCTGTGGGGAGGGAGAACGTGCTTGCTGTGGATTGGCTGGTTCAGCCGGAGGTGACGCTGACAGCAGCCGCTAAGCAGGTAGGAAGGAAGCTGGCTCGGATCATTCAGCAGCTCCTGGGTTTGAGGTCTGACCCAGAAATGTTTCACCTGATTGGTTTTGGGGTCGGAGCACACATTGCTGGCATCGCTGGTTCCTGGCTGAATGGCACTGTGGGCAGAATAACAGGCCTTGACCCATTCGCTCCAGAGTTCTCAGCACCAAACAGTTCCGTCTATCTGGACCGAGCTGACGGGCAGTACGTCGAGATCATCCACACCAACTTTAACCCTACTGAACCTGTGCCGGCCCTTGGGTTCTCCAGTCCTCTGGGCCACATCGATTACTATGTTGGTCTTGGATTTGAGTTACCTGGCTGTCCCAGTGGACTCATTAAGAGAGAAGATTACCTGCTGTGCAGTCATCGCCGAGCCCACCAGATCTACACCAGCTCAATCAGGGCACCCTGCCGCCACTTTGCTTTCCCCTGCCCGTCACTAGACAACTTCCAGCATACACTCTGTACCCTCTGCTATCAGCCTGGTCTTACCACCTGCCCTGAAATGGGTTATAACCTCACCTGGCTGCCTACAACCCGGCCACCTCTGTTCTCGCCCACAACTGTGTTCCTGACAGTCGCGCCTTCCCCCCCATACTGTGTAACTCCTCTCCTGCTGAAGCTGAAGATGGGAGGGATTTCCTCAATGGAGGCCAAACTCTACATCCAGCTGGAAGGAAACACCAACAAAACCTCCACCATGTTGGTGTCGGGTAAGGAGATAAGGGAGTTCGCAGCAAATAAGAATTATGAGTTCCTGATTTCGTCTGACAGTGCTGGAGATTTTCACACTATTACATTGGAGTTTAACACCCAGCGGCTGCTTCACCTAGACTGGAGAAAAAGAACTATTTCTATTGATCACCTTCTGCTATCCCATCTGCCCCTATACAAGAGGAAGTTTTACGAGGCGTGGAATATTGCAGTAGTGGAAAACCGAAGAGTAAAAGTTCTCTTGGAAGAAATTCTGGTGTAACAAGACTGAGGACACAATTCCTGTGTGATTACTACTATGACTATTTTTATCTTACCCAACTTTACTACTAAACTCCTTATAgagattaatttattaattaattaatttattgaattattcatttttaagaaACCTAATTGATATCAGGCAGTAgatgtttatattaaactttaattaCATAAACTATACATATTTGTATTCTATTCATATAGCCTATATGTATTCTCGCAGTGTAGAATGGGACTGTAtgtgagtgtaaaaaaaaaggcccatccaatcagaacccacAGTTGAACGTTGATTCAGCGTCCGAATTTCAAAACTACCCTGTGGCTCTGAGGCAATGTTAAACGGTTGTTTAAAGGTTGCTTGTCCgtcatcaacattaaaatatttaaaaccaaaatattaatgtctattcaatgttttttttgctatctgggtcttagtatattatatatacctgaaaaaacactgtttaaaaaggtTTGTTCATGCAGCTGTGGCATTTAAGCATAGTCTACAGTTGTCAGTTGTTCTCATGTGTTTGATATTTAGGTGATTGTTTATCTAGGTGATTCATTTACTGGTGTGTAATCCAGTCTGAactatgaaatattgtgataatatttagACGGTGCAATGTTTACTTGGTCAACAAGTAGGGTTGCCAcctgtcacacacacatcaacattaaaaaagttaatgaTCAGAAGCCCATTAAcagtacataaataataaaaaaaaaatatatatatataaatattaaatctatatgtttacatatttatattttgactACACAGCAGTTGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679770.1 True 2461 mRNA 0.43 9 25504077 25510167

Neighbor

gene id symbol gene type direction distance location
LOC103023437 NA coding upstream 3468 25483944 ~ 25500609 (+)
cxcr5 NA coding upstream 423651 25068911 ~ 25080426 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 889148 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1554189 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 1590814 23747742 ~ 23913263 (+)
dhx34 dhx34,LOC102778731 coding downstream 156 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 39261 25549428 ~ 25564612 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding downstream 56125 25566292 ~ 25576097 (+)
LOC103039536 napab,napa,LOC103039536,LOC108413256,LOC107668964,LOC107758075,LOC108264617,LOC103368726 coding downstream 70992 25581159 ~ 25586694 (+)
LOC111194838 LOC108435311 coding downstream 83219 25593386 ~ 25594254 (+)
G160543 NA non-coding upstream 84138 25417643 ~ 25419939 (+)
G160518 NA non-coding upstream 123584 25323403 ~ 25380493 (+)
G160384 NA non-coding upstream 455499 25046937 ~ 25048578 (+)
G160383 NA non-coding upstream 457163 25046714 ~ 25046914 (+)
G160369 NA non-coding upstream 596522 24907229 ~ 24907555 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 30242 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 84785 25594952 ~ 25599301 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding downstream 101549 25611716 ~ 25615298 (+)
G160647 NA non-coding downstream 194350 25704517 ~ 25706252 (+)
G160654 NA non-coding downstream 228620 25738787 ~ 25739361 (+)
G160306 NA other upstream 1384252 24119129 ~ 24119825 (+)
G160134 NA other upstream 2649996 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3351292 22147844 ~ 22152785 (+)
fam174b NA other upstream 4429504 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4492283 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 813653 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1107095 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1395077 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1599504 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2274729 27784896 ~ 27796504 (+)

Expression


Co-expression Network