LOC103029583 (LOC108437982,LOC108264139)


Basic Information

Item Value
gene id LOC103029583
gene name LOC108437982,LOC108264139
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27693743 ~ 27704738 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679794.1
ACAGTTCCACACACCTGTTCTGctcagagacagacagatgattTACCTCAGCTTCTCCATCTAAAATGGCTTTATCTGGATTACCTGCTAAAACCGGGCTGCTGCTGGGACTGTGTGTGCTGTGGCTGTGTTGTGCTTCCACTGCGGGAGAGGCCAGCTGCAAACTGAAGGCCAAGTTCAACCTGAATGGATACAAGAATGTGGAGAAGAAGAAGGTGGTTATAGGGGGGATGTTTGCTGTGCACAACCGGCTGATTTCCTCTGATAGCAACACTTCGTCTGTGCCTGTGTCATCTGGCTGTGAGTGgtTTAATTTCCGAACCTTCCGCTGGACGCAGACGATGCTCTTTGCCATCAATGAAATAAACGAGCGGAACGACCTGCTGCCCAACACAGATCTGGGCTACGTCATCTACGACTCCTGCTTCACCATTTCCAAGGCAGTAGAGGGCACTCTGACCTACCTGACTGGGCAGGACGAGGCCGTACCCAATTACCGCTGTGGGAACGGGGCTCCACTGGCGGCTCTGGTCGGGGCCGGCGGGTGTGACCTGTCCATCGCTACGGCTCGAATCCTCGGACTCTACTATTTCCCACAGGTGAGCTACTCGTCCTCGTGCTCAGTGCTGGAGAGCCGGTTCCAGTACCCCACCTTCCTGCGCACCATTCCCAGTGATGAGCACCAGTCAGTAGCCATGGCTCAGCTGGTGCTGCGCTTCGGCTGGACTTGGGTAGGCACCATCGCATCAGACGACGACTACGGCAAGTACGGCATCAAGCGCTTCAAGGAGGTGGTGGAAGAAGCGGGCGTGTGCATCTCTTTCTCCGAAGTTCTGCCCAAGTTCACCTCGCCCGAGAGCATCCAGCGGATTGTGCGCACCGTCACCGAGTCCACGGCCAAGATAGTGGTGGTCTTCTCCTCCGACGTAGACCTGAGCCCCCTGATAGGGGAGCTGGTCCGCAACAACGTCACCAACCGTACCTGGATCGCCAGCGAGTCTTGGGTCACCTCGGCCCTTGTTGCCAGCCAGCCTGACATCCACTCGGTCTTGGGCGGCACCCTTGGATTTGCCATCCAGCGAGCGGAAATCCCGGGCCTGCAGGAGCACCTGCTCAAGATTGACCCCTACCAGGATGCACTGACTGAGGAGTTCTGGGAGACGGCCTTCAACTGCACGCTCAGTTACAGTAAAGCCCTGAGAAACACCCGGTCTCTGAGGGCATCAAGAGAGGCTGGGAACGGGACAGGATCCCAAGCATCTGTCAGAGGAACACCGGACGGCTTGTGCTCCGGCAAGGAGAAGCTGCAGTCGCTGAGCAGCACATACTCAGACGTGTCCCAGCTGAGGCTGACCTATAACGTATATAAGGCCGTGTATGCTGTGGCGTATGCTCTGCATAACCTGGAGTATTGCATGCCCGGAAAAGGACCTTTCCAGGGTGGTTCTTGTGCTAACATCTCTAATTTTGAGCCATGGCAACTGATGTACTACTTGAAGAACCTGCGCTTTAATGTTCCTCACACCGGAGAGGAGATATTCTTTAACGATGGTGAAGTGACGGGATTTTACGAGATTCTGAATTGGCAGAGGAATTCTGACGGCAGCGTGAAGTATTCCCATATCGGATTCTACAACAGCACAGCACCTGCTGGAGAAAAGCTGACCATCGACAACACCTCCATCATCTGGAATAACGATGTGCTGCAGACTCCACGCTCTGTGTGCAGTGAGAGATGCCAGCCCGGGACCAGGATGGGTATCAGGCAGGGGGAGCCCGTCTGCTGCTTCGACTGTATCCCCTGTGCAGACGGAGAGATTTCCAACACTACAGATGCCAGAGGTTGCATTCAGTGTGAAGAGGACTACTGGTCCAATGCCAACCGAGACGCCTGTGTCGCAAAAACCATCGAGTTCCTGGACTTTGGAGAGGCTCTGGGCATCACTCTGATTGCCATTGCTGTTTTCGGGGCACTTTTGACCGTAGTAGTGGTTGTTGTCTTCCTGATGTACCTGAACACGCCATTGGTGCAGGTCAATGACCCGCTGCTCAGCTTCACCCTGCTGCTGGGGCTGGTGATCACCTTCCTGTGCTCCATTGTGTTCCTGGGAGAGCCAAGGCCCTGGTCCTGCATGACCAGCCAGGTGGCGCTAGCGGTCGGTTTCGCCATCGTCCTCTCGTCCCTCATGGGTAAATCCGCTCTGCTGATGCTCAGGGCAAGGGCTGTGAAGGCTGCCAAAGCTGCAGCCAAGGCGGCCAAAGAAGCGGCGGCTGCGTCTGAGCAGAGCCCGGACACAACTGTCATCGCACCAGCGCCCCCACCCAAAAACGACATCGACCCTATCAAACCCAGCCAGCAGAGGATAATGATGATCATCTGCACGCTAATCCAAGCTGTAGCTTGCACCGTTTGGTTGATCCTGCTCCCGCCACATCCAGTGAAGAACACAGCGGCCCAGAACATCAAGATCATCCTGGAGTGTGACCCGGGCAACATCATCTTCATCTGCAGTGTGTTCGGCTACGACGTCCTGCTGGCGCTCATAGCATTCATGTTTGCCTTTGTGGCACGCAAGCTGGAGGACCACTTCAGTGAGGGCAAGTGCGTGACCTTCGGCATGCTGGTGTTCTTCATCGTCTGGATCTCCTTCGTGCCTGCTTACCTGAGCACTCGAGGCAAGTTCATGGTGGCGGTGCAGATCTTCGCCATCTTGGCCTCCAGCTTCGGCCTCCTGATGTGCATCTTCCTCCCCAAGTGCTATGTGTTGCTGGTCAAACCCGAGAGGAACAAGGAGGAGATGATGATAACCAGGCCCAAACTCCGCGACTCCAAGACCACCGGTGCATCTGCTTCATCTGCTTCACTCTCCACAGAAGCCAACGGTAATGGCACCACCATCTCCACAGTATCAGTGGACGACTGACAGTGACTCTAACCTCCTTCTATCATCATATTCGCACAGAAAAGATAGAAGAAACTGTATTTCTGCCTCTAATATAACCTGGGACCTCATTTAGTCAGCATGGTAGGCTATTAAACACATCGACTAGGATGTAAAAGAACACGACAGGAAAGCGTGTTTAAAATGACTAGGTTGCTTCTCAGGGATGATCAAATGAGTAATGCACTTCCTTGATGTCTGTAAATCAGTCTAACACTGTGGTGACCAACCCTACTTCTGGAGATCTACGTTCCTGCAGAATTCAACTCAAGCCCAAATCTTACATGCCtaatttaaaggaacaatcagtgaTAAATGTGAGCGAAAGCCCCAATCACTACTCTCCAGATGCGAAGCTTACAatctgggttgccagattgacacagtggcaagctaCGAtaagtcttactctgtagctgatcagtgaatatatacgTTTGCAATGTGTCTACTGTGTGTAAATTACCTTGCTATggtcagcaaccttactgaagatcagtgattacctgtttagcAGAACAGGCTCCAGCACACTGCTGTCTGCTgtgctgttgtctatacctggcagccCAGTTGTTGGAAATGGGAATGGGGGTCCGCACCAATGTTTTTGTGTCTTTGTTAGATTGTGTGCATTTGGTCAACCTATACTTCTATTAATTGGTTGGAAGAATGTTAGTAGAAAGTTGGTTTGCCAGGTGTTGTGATGAATCCGACTCATCTTCACGTATACTCAGGTACACTTTAGGATGTTTTATGGCATTGGGCTCTGCCAGCTTGCAAAAGGATATGACTATACATTATTAGAAGCGCTGAGTGGTCTATCACTATGATCACAgcttcaccatcagcagccagaatcTGAGAGAGCACTAATGGCCCTTTTTTTACCACTCTAGAGATCACTTTACTGATGCTTTTTCAACCATACCCAAGCCCACCAATGCATGTAGAATTATCTGGTGATCTAGCTCAGATGTTTTCAGTCAAGGTTGAGAGTTAACTCACCAAGAAGGTAGATCTTCAGGAGCAGTGACTTGTGGCTACCAACAATCAAACAAAAGCCCCATGTATTTGTACAACTGCACAGATAAACTATTGGCTCATGTCCAAATTCCTACCTTTGCATTTCTTCTACAAAAGCAGAACTTTAGTTTTTCTATCGTACACTcattaacaaaaacataacGCACAAAGATGTTCATTGTTGGCATGGAATGAATCGTTATATGTGTCAATGTAATAATGATTTATGTAAGTCATTACACTATTAATGTTAGAGCGAAAGGATgcatttatttggaaatcatGCATATCCAGTATGGCATCCTGTGGCACAtttgcccacagatgttgcagctgggcctgtagattcTGCACACTCCCAACTGTACCAATAAATTATTGATT

Function

NR:

description
PREDICTED: vomeronasal type-2 receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679794.1 True 4352 mRNA 0.51 6 27693743 27704738

Neighbor

gene id symbol gene type direction distance location
LOC107196896 NA coding downstream 273487 27419612 ~ 27420256 (-)
tiparp tiparp,LOC106613254 coding downstream 317006 27339409 ~ 27376737 (-)
lekr1 NA coding downstream 396744 27136682 ~ 27296999 (-)
ptx3 NA coding downstream 776075 26905211 ~ 26917668 (-)
LOC103047806 NA coding downstream 887409 26801289 ~ 26806334 (-)
gmps gmps coding upstream 14316 27719054 ~ 27751937 (-)
LOC103046178 LOC108437989,LOC108263992,LOC108434102,LOC108263974 coding upstream 279625 27984363 ~ 27988762 (-)
LOC111194787 NA coding upstream 287127 27991865 ~ 27996076 (-)
LOC103034808 NA coding upstream 311267 28016005 ~ 28020224 (-)
LOC107196860 NA coding upstream 321320 28026058 ~ 28029932 (-)
LOC111194786 NA non-coding downstream 272059 27420486 ~ 27421684 (-)
G161065 NA non-coding downstream 283035 27410488 ~ 27410708 (-)
G161062 NA non-coding downstream 285409 27408072 ~ 27408334 (-)
G161057 NA non-coding downstream 309165 27367862 ~ 27384578 (-)
G161042 NA non-coding downstream 498546 27191465 ~ 27195197 (-)
G161147 NA non-coding upstream 73986 27778724 ~ 27779787 (-)
LOC111194796 NA non-coding upstream 476877 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding upstream 483258 28187996 ~ 28189702 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding upstream 497582 28202320 ~ 28202855 (-)
G161273 NA non-coding upstream 680909 28385647 ~ 28386666 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 114825 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 574490 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 1348034 26342351 ~ 26345709 (-)
G160715 NA other downstream 1954381 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 2091031 25600660 ~ 25602712 (-)
LOC111194804 NA other upstream 888762 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 1182173 28886911 ~ 28941387 (-)
G161711 NA other upstream 2610868 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2994432 30699170 ~ 30781708 (-)
tap1 NA other upstream 4947230 32651968 ~ 32675269 (-)

Expression


Co-expression Network