LOC103046178 (LOC108437989,LOC108263992,LOC108434102,LOC108263974)


Basic Information

Item Value
gene id LOC103046178
gene name LOC108437989,LOC108263992,LOC108434102,LOC108263974
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27984363 ~ 27988762 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679798.1
TTCCTTTTCATTTCACTCACGACTGCTGTCCATTTCTTGTTAGGGGATGGCAGCAGATGCTTGGCTATGGATGCTGATGCTCCTGGTTTATCCAGTATGGGTGCACTATCTGGGACTGTCCTGTACTCTGCAGAGCAGGTCCGTGCCAGGAAGCCTGTATAAAGATGGAGACGTTATTATTGGAGGCCTATTTCCTGTTCATACTCAGGCTCCTGAGCCTAATCAAATATTTACTCAAAGAGCAGCAGCGGGCCGTTGCCAAAGtgtTGAACTGCGCTCGTATCGCTGGCTTCAGACAATGATCTTCACAGTGGAGGAAATCAACCGAGACCCAGCCCTGTTGCCCAATCTTACACTGGGCTATCTGGCTGTAGATACTTGTCTGAGTGAGGGCAGTACATTGAATGCTGCATTGTCACTGGTGACGGGGAAAGAGGAGGTAGTGTCTGGAGAAGAGTGTACCAGGGCTCCCACTGTGCCTGTCATTATTGGTGATGCTCGCTCATCTGCCTCAATCGTGCTGGCAGATACACTTGGTGTTTTTGGCATCCCCATGGTTAGTTACTTTGCTTCCTGTGCATGTCTCAGTGACCGTACCAAGTACCCCACTTTCATGCGTACTGTTCCAAGTGATGCTTTCCAGGCAAAAGCAATAGCTCGCCTCCTCCGCTTGATGGAATGGTCCTGGGTGGGGGTTGTATATGGAGATGATGCTTATGGAAAAAGTGGTGTTCAACTGTTGGTACAGGAACTGCAAGGATCAAGCGTGTGTGTGGACTATATGGAGGTCATCCCAAAATCTCATGCACAGAGCAGGATTAATCGAATTGTGCAAAGAATACAGAGCTCCAGTGCCCATGTGGTGGTGACCTTTGCCATCAGTCCTGATATAGAGGTTTTGCTGAGAGAAGCAGTGAGACAGAATGTGACTCACAAGCAGTGGATTGCAACTGAAGCCTGGAGCACTTCCAGCTACTATTCTGCATGGAGCGGCCTCTTTTTGGTAGGCACCCTTGGTTTTGCCCTGCAGAGAGTGGATATCCAGGGTTTGAGCTCCTATCTAACATCACTTAGCCCAGAGGAGCACTTAAAGGAGCAACTTGTACAAAATGTTTGGGAGGAGGTGTTTGGTTGCAGATTTGGGGAGGAAACCCAATCTGGATCACCACGTCCACAGTGTACAGGTTTTGAGAAAGTGGAAGAGCAGGGAGATGCCTACTTTGACGTAATGTATAATGTTTATAAGGCTGTATATGCTATTGCCAATGCAATTCAGGACATGCTGGACTGTCAGCCTGGCAAAGGGCTTTTAGAGAATGGAGAATGTCCTGATATCAAACCAGTTAGACCCAATCAGCTACTACACTACATAAAGGCAGTACAGTTCACAACACCAGTGGGTGAGCCAGTACATTTTGACCAGAACGGGGACCCAACTGCTTCATACGACATCATTAACTGGCACACAGgatcagaaaataaaacagagttTGTCAAAGTGGGGCAGTTTGACACAGCGAGAGGACCTGGGGAAGACTTTCAGTTAGACCTCAGTAAAGTGTTCTGGGGAGGTGGCTGGGATCACAAGGTGCCAGTATCTGTGTGCAGTGAGAGCTGTCCCCCGGGCACCAGGAAGGCTGTGCAGAAGGGGAAGCCGATCTGCTGCTTTGACTGTATTCATTGTGCAGCAGGAGAGATCAGCAATACTACTGATTCTACAGAGTGCATCAAATGCCCAAAGCGGTTTTGGCCCAACACTGGTCAGACAGAATGCATCCCAATGACAGTGGAATTTCTGTCCTTTCAGGATAACATGGGCATTATCCTCGCTGTGCTGTCTGTTGCTGGGGCAGCACTTACTGGTACAGTCTTTGCCGCTTTCTTCCGTCATCGAGATACACCCCTGGTCCGCGCCAATAACTCAGAGCTGAgcttcctgctgctgctctcacTCAAACTCTGCTTCCTGTGTGCTCTGGCTTTCATTGGCCGTCCAGCTCCTTGGTCCTGCATGCTGCGTCATACTCTGTTTGGGATCAGTTTTGTGGTGTGTCTGGCCTGTGTGCTCAGTAAGACCGTGGTGGTTCTGGTTGCATTCAGAGCAACTCTGCCTGGATCAAACTTAATGAAGTACTTTGGTCCTCTTCAGCAGAGAGCAGGTATCTTCTTCTGTACGATGGTGCAGGTGGGGATCTGTGTGCTGTGGCTGGCACTGGCACCACCTCTACCCACAGAAACTGCAGGAGGTGAGCTTGGAGCTCGGGTAGTAGAGCTCTGTGCGGTGGGTTCTGTGGTGGGCTTCTCCCTGGTTCTGGGCTACATCGGCCTGCTGGCAGCCGTCTGCTTTCTGCTGGCCTTTTTCGCAAGAAAACTTCCAGACAATTTTAATGAGGCCAAATTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTGTGGATTGCATTTGTGCCGGCATACGTCAGCTCTCCAGGGAAGTACACTGTGGCTGTGGAGGTCTTTGCTATCCTGGCCTCCAGTTACGGGCTTCTACTGTGCATCTTTGCCCCAAAGTGTTACATTATCTTACTCAGACCAGAGAGGAACACAAAGAAGAACATGATGGCCAAATAGGAGAACAGACTGTACACAAAGAACTTTATAATAATGAGACCTTTATACTGAACACATCCCAGAGAGCTGAGATTGTGTACTGTTTGCCTTAGCTGTGCTATTTGGTGCAGTTTTTTTACTGTACAATCCCTCAGTGTTATCAAGTAAATCAGTTTTAGAGATCTTGTACCATGAATCATAACCATGCATGTGTGATATGtaccaaaaataaatagatttactctttttttaatgataaatgcTATAATAAATCACATACaagcaaaatacattttaagttgaAAAAGGACTCACCTGCATCATCTATTCGTGAAGTAGGATATTCTCCAGCCATTTTAGCTCATCTGCATTTAGAATATAAGAAACAGTCATTAATGaagcaataaaacacaataagtATTAAGCACAGGAAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679798.1 True 3024 mRNA 0.47 6 27984363 27988762

Neighbor

gene id symbol gene type direction distance location
gmps gmps coding downstream 232426 27719054 ~ 27751937 (-)
LOC103029583 LOC108437982,LOC108264139 coding downstream 279625 27693743 ~ 27704738 (-)
LOC107196896 NA coding downstream 564107 27419612 ~ 27420256 (-)
tiparp tiparp,LOC106613254 coding downstream 607626 27339409 ~ 27376737 (-)
lekr1 NA coding downstream 687364 27136682 ~ 27296999 (-)
LOC111194787 NA coding upstream 3103 27991865 ~ 27996076 (-)
LOC103034808 NA coding upstream 27243 28016005 ~ 28020224 (-)
LOC107196860 NA coding upstream 37296 28026058 ~ 28029932 (-)
LOC103035129 NA coding upstream 53138 28041900 ~ 28046058 (-)
LOC107196884 LOC108263974,LOC108434102,LOC108437989 coding upstream 64662 28053424 ~ 28058214 (-)
G161147 NA non-coding downstream 204576 27778724 ~ 27779787 (-)
G161136 NA non-coding downstream 281135 27692435 ~ 27703228 (-)
LOC111194786 NA non-coding downstream 562679 27420486 ~ 27421684 (-)
G161065 NA non-coding downstream 573655 27410488 ~ 27410708 (-)
G161062 NA non-coding downstream 576029 27408072 ~ 27408334 (-)
LOC111194796 NA non-coding upstream 192853 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding upstream 199234 28187996 ~ 28189702 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding upstream 213558 28202320 ~ 28202855 (-)
G161273 NA non-coding upstream 396885 28385647 ~ 28386666 (-)
G161275 NA non-coding upstream 399801 28388563 ~ 28390456 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 405445 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 865110 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 1638654 26342351 ~ 26345709 (-)
G160715 NA other downstream 2245001 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 2381651 25600660 ~ 25602712 (-)
LOC111194804 NA other upstream 604738 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 898149 28886911 ~ 28941387 (-)
G161711 NA other upstream 2326844 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2710408 30699170 ~ 30781708 (-)
tap1 NA other upstream 4663206 32651968 ~ 32675269 (-)

Expression


Co-expression Network