LOC107196882 (LOC108434085,LOC108264118,LOC108434032)


Basic Information

Item Value
gene id LOC107196882
gene name LOC108434085,LOC108264118,LOC108434032
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28173610 ~ 28177986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679804.1
TGTGATTCTTTACGAAAATCAAGACCATCCCTCTCAGTGTTAACTTATTTATGCCCATCTGTGCCCTCTTGCCATTCTGTGTCAGTTATGGCACACTATGCTTGTCTGCTCACATTTTGCTTTCTACTGAACATGCCTATATGGTGTCAGAATACAAACAATGATAAGTGCATCTACCAAGGAGAAGAAGGCACCCAAAGTTTCTACCAGGATGGAGATGTGATTTTGGGGGGCTTGTTCCCTCTGCACTACAGCCCTATCACAACAGTCTCATCTTTCCAAAGCAAACCTCCTCCGACTGAGTACAAAtaCTTTGGTGCTCGAACCCTCAGATGGATAAGGACTATGGCATTTGCTGTAAATGAGATAAACCAGAGACAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGAGACAGCTGTGATGAGGTACCCTTGTCAGTGAAGGGATCCCTGGTCCTGGTGAATGGGCAGCCAGACACAGGGCAAGGATCCAGCTGTGCAGATGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGCTACTTTTCATCCTGCTCATGTCTGAGTAACAAGAAGGAATTCCCCACATTTATGAGGACAATGCCAAGCGATGAGTTTCAAATTAAAGCTTTAGCAAGGCTAGTGCATTATTTCCAGTGGACTTGGGTGGGGCTTATAGGTGTGGAGTCGGACTATGCTCGCTTTGCAATCCAGCTCTTTCTAAAGGAATCAGCCAGGTATAACGTGTGCCCTGCGTATGTACACATCTTCCCTGTTTATTTGTCCAAAGAAGCACTTAGAGACCTGATGCACACTATTCGGTCTTCCACTGCCACAGTAATAGTCAACTTTGCTGTAGAGACGGACCTGCGGACCATCTTGACAGAATGCAAGCGACAAAACCTTACCCATCTGCAGTGGATTGCAAGTGAGGCTTGGGCCACCTCAAAGGCCCTGTGGGGTGATTTTAATGATATCTTGAAGGGAACGCTGGGTTTTGCCATACGGAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAATACCTCCAGTGTTCAGGCTTCTCATTTTTTAACCGAGTTTTGGGAAGAAACATTCAACTGTCGGATCAATGGGTCCTTAAACACCCATATACACAAAGAGGGTGTGAAGAACAGAGGGCCATGCAGTGGAAGAGAGAGTCTGGATGATGTGTACAGTCCATATGCAGATGTGACCCAGCTTAGAGTCAGCTACAATGTGTACAAGGCTGTATATCTTATAGCTCACGCCTTGCATGATATGAGCACATGTGTTCCAGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTCTGCCATGGCAGCTCCTGAGctacatgaaaaaaacaagcttCACAACGCTGGGAGAAGATGTCCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTCTTTGATGCCTCACTAAAGGAGGACAAAGACCTGGTCATTAATGAATCGATGATTATGTGGCACAGAGAAAACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGCGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTACCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAGCGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCGTGCTTTCTGATTGGTCTGACATTTATTGGGAAGCCCTCTAACTGGCTGTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAAACTATAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCAGGCAGCAATGTCATGAAGTGGTTTGGTCCGGCCCAACAGAGGCTAAGTGTCATACTGTGCTCTTGTGTTCAAGCACTAATCTGCATCATATGGCTAACTACTAAACCTCCTTCTGCTGCCTATAACACTGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTCTGGCTTGCATGTGCTTTTTAATAGCTTTCTTCGCCAGGAAGCTCCCTGATAATTACAATGAAGCAAAATTCATTACATTTAGCATACTCATCTTTTTTGCTGTGTGGATAACTTTCATCCCGGTATATGTGAGCACTCGTGGAAAGTATATGGTTGCTGTGCATGTGTTTGCCATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCCCCAAAATGCTACGTTGTGCTGCTGAGacctgaaaaaaacagcaaaaaacatatgatgaaaaaatgaaaatgttaatttatattataatgaTTATACTGTTCATTCATACTGAAACTTGGAGTCATATACTGAAACAATTTTCAATATAAGCCTGTAGACTtaactaaacaataaacaataaacctcAAAAA
>XM_022679806.1
TTGGGGGGCTTGTTCCCTCTGCACTACAGCCCTATCACAACAGTCTCATCTTTCCAAAGCAAACCTCCTCCGACTGAGTACAAAtaATGGATAAGGACTATGGCATTTGCTGTAAATGAGATAAACCAGAGACAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGAGACAGCTGTGATGAGGTACCCTTGTCAGTGAAGGGATCCCTGGTCCTGGTGAATGGGCAGCCAGACACAGGGCAAGGATCCAGCTGTGCAGATGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGCTACTTTTCATCCTGCTCATGTCTGAGTAACAAGAAGGAATTCCCCACATTTATGAGGACAATGCCAAGCGATGAGTTTCAAATTAAAGCTTTAGCAAGGCTAGTGCATTATTTCCAGTGGACTTGGGTGGGGCTTATAGGTGTGGAGTCGGACTATGCTCGCTTTGCAATCCAGCTCTTTCTAAAGGAATCAGCCAGGTATAACGTGTGCCCTGCGTATGTACACATCTTCCCTGTTTATTTGTCCAAAGAAGCACTTAGAGACCTGATGCACACTATTCGGTCTTCCACTGCCACAGTAATAGTCAACTTTGCTGTAGAGACGGACCTGCGGACCATCTTGACAGAATGCAAGCGACAAAACCTTACCCATCTGCAGTGGATTGCAAGTGAGGCTTGGGCCACCTCAAAGGCCCTGTGGGGTGATTTTAATGATATCTTGAAGGGAACGCTGGGTTTTGCCATACGGAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAATACCTCCAGTGTTCAGGCTTCTCATTTTTTAACCGAGTTTTGGGAAGAAACATTCAACTGTCGGATCAATGGGTCCTTAAACACCCATATACACAAAGAGGGTGTGAAGAACAGAGGGCCATGCAGTGGAAGAGAGAGTCTGGATGATGTGTACAGTCCATATGCAGATGTGACCCAGCTTAGAGTCAGCTACAATGTGTACAAGGCTGTATATCTTATAGCTCACGCCTTGCATGATATGAGCACATGTGTTCCAGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTCTGCCATGGCAGCTCCTGAGctacatgaaaaaaacaagcttCACAACGCTGGGAGAAGATGTCCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTCTTTGATGCCTCACTAAAGGAGGACAAAGACCTGGTCATTAATGAATCGATGATTATGTGGCACAGAGAAAACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGCGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTACCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAGCGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCGTGCTTTCTGATTGGTCTGACATTTATTGGGAAGCCCTCTAACTGGCTGTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAAACTATAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCAGGCAGCAATGTCATGAAGTGGTTTGGTCCGGCCCAACAGAGGCTAAGTGTCATACTGTGCTCTTGTGTTCAAGCACTAATCTGCATCATATGGCTAACTACTAAACCTCCTTCTGCTGCCTATAACACTGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTCTGGCTTGCATGTGCTTTTTAATAGCTTTCTTCGCCAGGAAGCTCCCTGATAATTACAATGAAGCAAAATTCATTACATTTAGCATACTCATCTTTTTTGCTGTGTGGATAACTTTCATCCCGGTATATGTGAGCACTCGTGGAAAGTATATGGTTGCTGTGCATGTGTTTGCCATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCCCCAAAATGCTACGTTGTGCTGCTGAGacctgaaaaaaacagcaaaaaacatatgatgaaaaaatgaaaatgttaatttatattataatgaTTATACTGTTCATTCATACTGAAACTTGGAGTCATATACTGAAACAATTTTCAATATAAGCCTGTAGACTtaactaaacaataaacaataaacctcAAAAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679804.1 True 2810 mRNA 0.45 6 28173610 28177986
XM_022679806.1 False 2564 mRNA 0.46 6 28173835 28177986

Neighbor

gene id symbol gene type direction distance location
LOC103045576 LOC108437981,LOC108264123 coding upstream 95878 28071491 ~ 28077732 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding upstream 195928 27969058 ~ 27977682 (+)
plch1 plch1 coding upstream 207920 27805063 ~ 27965690 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding upstream 395144 27762391 ~ 27778466 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding upstream 743829 27423510 ~ 27429781 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding downstream 2696 28180682 ~ 28184907 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding downstream 7764 28185750 ~ 28195714 (+)
gpr149 gpr149 coding downstream 77986 28255972 ~ 28283318 (+)
dhx36 dhx36 coding downstream 122733 28300719 ~ 28386417 (+)
arid3b LOC108439030,LOC108264089 coding downstream 590620 28768606 ~ 28859096 (+)
LOC111194734 NA non-coding upstream 138415 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 280133 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 390421 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 546188 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 586840 27586529 ~ 27586770 (+)
G161243 NA non-coding downstream 188182 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 465335 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 474566 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 490187 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 708456 28886442 ~ 28886800 (+)
c18h3orf33 NA other upstream 377106 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1054346 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1265983 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1418297 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1827928 26323820 ~ 26345682 (+)
G161292 rap2b,LOC107757383 other downstream 444142 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 567710 28745696 ~ 28759007 (+)
G161331 NA other downstream 892834 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2175700 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2676572 30854558 ~ 30894506 (+)

Expression


Co-expression Network