LOC111194790 (LOC108434085,LOC108264118,LOC108434032)


Basic Information

Item Value
gene id LOC111194790
gene name LOC108434085,LOC108264118,LOC108434032
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28185750 ~ 28195714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679807.1
aatgtacgtAATCTTTAAGCAGTCTAATATtggatatatataatattggatAATAAGCATGATCCAATCAGCTGATTAGCAGCTGGAGGtcttattgtaaaataatgctgccaGGGGTAAGAACTAATGCCATtggtccacatgcttctttggGAAAGTTCAAGGACATCCCCTGCTCAGTGTAGACGTATAAATGGTTATTTGTGCACTCTTACCGGTTTGTGTCAGGTATGGCACACCATGCTATTGTGCTCACATTCTGTTTTTTACTTAACATGCCTATGTGGTGTCAGTCCACACACACGGATGAGTGCATCTATGAGGGAGAAGAAAGAACCCAAAATTTCTTTCATGATGGGGATGTGATTCTGGGGGGCTTGTTCCCCTTACACTATAGCCCTGTGTCATCAGTGTGGTCTTTTCAAAGCAAACCACCTCCCACTGATTACAAGTACTTTAGTGCCCGAGCTCTCAGATGGATGAGGACTATGACCTTTGCTGTAAATGAGATAAACCAGAGAAAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGGGACAGCTGTGATGACATTCCTACATCTTTGAAGGGGTCCCTGGTCCTGGTGAATGGGCAGCCAGAGATTGGTCAGGGTGCCAGCTGTGCAGAAGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGTTACTTTGCATCCTGCTCTTGTCTGAGTAACAAGAAGGAGTTCCCTGCATTTATGAGGACGATGCCAAGCGATGAGTTTCAAATTAAAGCCTTAGCAAAGCTGGTCCATTATTACCAGTGGAGCTGGGTGGGAGTCATAGGTGTGGAGTCGGACTATGCTCGCTTTGCCATCCAGCTCTTTCTAAAGGAATCAGCCAGGTATAATGTGTGCCCTGCATATGTACACTTCTACCCTGTTACTCTGTCCAAAGATGCATTGAGAGAGCTGATGCACAATATTCAGGCCTCCACAGCCACAGTCATTCTCAATTTCTCTGGAGAGTCAGAACTGCAAACCATCCTGCAAGAGTGCCGACAACAAAACATCACCCATCTGCAGTGGATTGCCAGTGAAGCCTGGGCCACCTCAAAGGCCTTGTGGGTTGAATTCAGTGATATCCTACAGGGAACACTGGGATTTGCTATACGAAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAACACCTCCAATATTCATGCTTATAATTTCCTAACTGAGTTTTGGGAGGAAACATTCAACTGTCAGGTCAATAGGTCCCTAAACACCCATATACACAAAGAGGGTGTGAAGAACAGAGGGCCATGCAGCGGAAGAGAGAGTCTGGATGATGTGTACAGTCCATATGCAGATGTGACCCAGCTTAGAGTCAGCTATAATGTGTACAAGGCTATATATCTAATAGCTCACACCTTGCATGATATGAGCACATGTGTTCCCGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTTTGCCATGGCAGCTTCTGAGCTACATGAAACGAACAAGCTTCACAACACTTGGAGAAGATGTTCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTTTTTGATGCCTCACTGAAGGAGGACAGAGACCTGGTCATTAATGAATCAGTGATTACATGGCACAGAGAAAACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGTGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTACCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAGCGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCATGCTTTCTGATTGGTCTGACATTCATTGGGAAGCCCTCTAACTGGCTCTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAAACTATAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCTGGCAGCAATGTCATGAAGTGGTTTGGTCCGGCCCAACAGAGGCTAAGTGTCATACTGTGCTCTTGTGTTCAAGCACTGATCTGCATCATATGGCTAACTACTAAACCTCCTTCTGCTGCCTATAACACGGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTTTGGCTTGCATGTGCTTTTTAATAGCTTTCTTTGCCAGGAAGCTCCCTGATAATTACAATGAAGCCAAATTTATCACGTTTAGCATGCTTATATTTTTTGCTGTCTGGATAACTTTCATCCCGGTTTATGTAAGCACCCGTGGGAAGTATATGGTTGCTGTGCATGTGTTTGCAATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCTCCAAAATGCTACATTGTGCTGCTGAGacctgaaaaaaacagcaaaaaacatatGATGAAAAAATAGTGTTCTGTTAAAACACTGGTTAGTGCACAGATATAATACctatataaacaataaacaatgacTCTATAAA
>XM_022679808.1
TCTGCAGCATTACATAGATGGATCATTGGCCTGTCTCCtgattaatactgtttttttttttgtctcattttgtaACACAATACGAGAAATTTACAGGAAAATACGAATATGTGAAGACTGCGGAAAAGAGGGGTAAAAACTGTAGTATCCAGGCCAAAACAGCTTTAGTGCCCGAGCTCTCAGATGGATGAGGACTATGACCTTTGCTGTAAATGAGATAAACCAGAGAAAAGACCTGTTACCAAACCTGACTCTGGGCTATCACATTCGGGACAGCTGTGATGACATTCCTACATCTTTGAAGGGGTCCCTGGTCCTGGTGAATGGGCAGCCAGAGATTGGTCAGGGTGCCAGCTGTGCAGAAGTACGCAGACAGCCCTCTCCAGTCATTGTGGGAGATGCAGCATCAGGGGTTTCCATGGCTGTGCTGAGAACACTGGGCTCATTCAGTGTGCCTTTGGTGAGTTACTTTGCATCCTGCTCTTGTCTGAGTAACAAGAAGGAGTTCCCTGCATTTATGAGGACGATGCCAAGCGATGAGTTTCAAATTAAAGCCTTAGCAAAGCTGGTCCATTATTACCAGTGGAGCTGGGTGGGAGTCATAGGTGTGGAGTCGGACTATGCTCGCTTTGCCATCCAGCTCTTTCTAAAGGAATCAGCCAGGTATAATGTGTGCCCTGCATATGTACACTTCTACCCTGTTACTCTGTCCAAAGATGCATTGAGAGAGCTGATGCACAATATTCAGGCCTCCACAGCCACAGTCATTCTCAATTTCTCTGGAGAGTCAGAACTGCAAACCATCCTGCAAGAGTGCCGACAACAAAACATCACCCATCTGCAGTGGATTGCCAGTGAAGCCTGGGCCACCTCAAAGGCCTTGTGGGTTGAATTCAGTGATATCCTACAGGGAACACTGGGATTTGCTATACGAAAAGCAGAAATCCCAAATCTATACAGCTACCTCAGAGAGCTGAACACCTCCAATATTCATGCTTATAATTTCCTAACTGAGTTTTGGGAGGAAACATTCAACTGTCAGGTCAATAGGTCCCTAAACACCCATATACACAAAGAGGGTGTGAAGAACAGAGGGCCATGCAGCGGAAGAGAGAGTCTGGATGATGTGTACAGTCCATATGCAGATGTGACCCAGCTTAGAGTCAGCTATAATGTGTACAAGGCTATATATCTAATAGCTCACACCTTGCATGATATGAGCACATGTGTTCCCGGAGAGGGCCCTTTTCAGAATGGGACGTGTGGCAGCCTGAATCCCATTTTGCCATGGCAGCTTCTGAGCTACATGAAACGAACAAGCTTCACAACACTTGGAGAAGATGTTCGCTTTGATGAGAATGGGGACCCTATCGCCTCTTATGATCTGATGAACTGGCAGGTGGCAGAAGATGGCTCTCTTTTGCTGGTCAAGGTGGGGTTTTTTGATGCCTCACTGAAGGAGGACAGAGACCTGGTCATTAATGAATCAGTGATTACATGGCACAGAGAAAACAAGGCACCAGAATCTGTCTGCAGCAAAAGTTGCCTGCCAGGCTCCAGGAAAGCCAGGCGAAAGGGTGAACCCATATGCTGCTTTGACTGCATACCGTGTGGTGAGGGAGAGATTAGCAATCAAACAGACTCAATTGACTGTTTGAGATGTTCAAAGGAGACGTGGCCGAACCAAGCCAGAGACCAGTGCATGCCAAAGACCCTGGAGTACCTGTCCTTTCAGGAGCCCCTGGGAATAGTTCTCTGGGCTGTTTCAACCTTTGGAGCATTTTTAACTGCAGCGGTACTTTTCGTGTTCGTGATCTACAGGAAGACCCCCGTCATCAGAGGAAACAACATGGAACTCAGCTTCCTGCTTCTCCTGTTCCTCTGTGCATGCTTTCTGATTGGTCTGACATTCATTGGGAAGCCCTCTAACTGGCTCTGCCAAATCAGATACACAGCCTTTGGAATCAGTTTTGCTCTTTGTATCGCCTGCATCTTGGCTAAAACTATAGTGGTTCTGATGGCTTTCAGGGCCACCCTTCCTGGCAGCAATGTCATGAAGTGGTTTGGTCCGGCCCAACAGAGGCTAAGTGTCATACTGTGCTCTTGTGTTCAAGCACTGATCTGCATCATATGGCTAACTACTAAACCTCCTTCTGCTGCCTATAACACGGAGTTTATGAGTGCTACTATAATTGTTGAGTGTAATGTGGGGTCTGAGCTAGGATTCTGGTGTGTGTTGGGATACATTGGCCTTTTGGCTTGCATGTGCTTTTTAATAGCTTTCTTTGCCAGGAAGCTCCCTGATAATTACAATGAAGCCAAATTTATCACGTTTAGCATGCTTATATTTTTTGCTGTCTGGATAACTTTCATCCCGGTTTATGTAAGCACCCGTGGGAAGTATATGGTTGCTGTGCATGTGTTTGCAATCTTAGCATCTGCTTTTGGTCTCCTTTTGTGTATATTTGCTCCAAAATGCTACATTGTGCTGCTGAGacctgaaaaaaacagcaaaaaacatatGATGAAAAAATAGTGTTCTGTTAAAACACTGGTTAGTGCACAGATATAATACctatataaacaataaacaatgacTCTATAAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679807.1 True 2898 mRNA 0.45 6 28191379 28195714
XM_022679808.1 False 2606 mRNA 0.46 6 28185750 28195714

Neighbor

gene id symbol gene type direction distance location
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding upstream 843 28180682 ~ 28184907 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding upstream 7764 28173610 ~ 28177986 (+)
LOC103045576 LOC108437981,LOC108264123 coding upstream 108018 28071491 ~ 28077732 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding upstream 208068 27969058 ~ 27977682 (+)
plch1 plch1 coding upstream 220060 27805063 ~ 27965690 (+)
gpr149 gpr149 coding downstream 60258 28255972 ~ 28283318 (+)
dhx36 dhx36 coding downstream 105005 28300719 ~ 28386417 (+)
arid3b LOC108439030,LOC108264089 coding downstream 572892 28768606 ~ 28859096 (+)
LOC103037946 LOC108439022 coding downstream 759003 28954717 ~ 28969395 (+)
LOC103022881 LOC108439021 coding downstream 822346 29018060 ~ 29063139 (+)
LOC111194734 NA non-coding upstream 150555 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 292273 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 402561 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 558328 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 598980 27586529 ~ 27586770 (+)
G161243 NA non-coding downstream 170454 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 447607 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 456838 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 472459 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 690728 28886442 ~ 28886800 (+)
c18h3orf33 NA other upstream 389246 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1066486 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1278123 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1430437 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1840068 26323820 ~ 26345682 (+)
G161292 rap2b,LOC107757383 other downstream 426414 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 549982 28745696 ~ 28759007 (+)
G161331 NA other downstream 875106 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2157972 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2658844 30854558 ~ 30894506 (+)

Expression


Co-expression Network