LOC111194798 (LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945)


Basic Information

Item Value
gene id LOC111194798
gene name LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28199233 ~ 28201138 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679819.1
TGTTTAGAAAACGTACAGGTGCTCACAGTTATGTACCTTCCCATCCTACATTACGCTGATACTGCtgcgaggtgcattctggggCTGTAAGAAGTGCACACAAGTCACCTTCCATGCATCCTCGATAAAGTGGGAGGAGCAAGATCACATCCGGGTATTAGTTGTGTACTTGGCTAACTGTGATCTTCTGAATTTGAACAGTACTTGGGCTGCGACTGATGACGTTTCACGAgtccacaagaacacaagtaTAGACAAGAACGCAGATTGAGAAACGGCCAGTGTCACTCTGAAAGAGCTAAAGAAATCCACAGTAATCCTCAATAACACacttttaagtttgtggttgcaaGGTAACAACATGTacatgaatatttttgcaagccactgtatacgCCATAAACAAGACCCTTAACATACGAGTGTCTGTTTGTACACTGAATAACTGTTTAATGCTTttgaacaaacttttttttctccctgaATAGGAGCAGCGGACTGTATGTCTTGTCCAATAGAGTACTGGTCTAACGAGAGAAAGGACAGCTGCATTATGAAAGTTACTGAGTTCCTGTCATACACTGAAACAATGGGGATTGTTCTGGTGGCTCTGTCACTGTTTGGTGCATGTTTAACATTTTCTACACTGGTGGTGTTCATACATTTCCGAGAAACACCAATAGTAAAAGCTAATAATTCAGAACTGAGCTTACTGTTACTTGTCTCGCTAATCCTCTGCTTCCTCTGTCCTGTCACATTCATCGGGGAGCCCACAGTCTGGTCTTGCATGTTGCGCCACACTACATTTGGCATCACCTTCGCCCTCTGCATTTCCTGTGTGCTGGGAAAAACCATAGTTGTTGTAACTGCTTTCAGAGCAACATTGCCTGGTAACAATATGGCAGCAAAGTTTGGGCCAGCACAACAAAGGGGCATTGTGTGTTCATGTACTGTGATTCAAGTAGTCATCTGTATTCTCTGGTTAAAGATCTCACCACCATTTCCAAATAAACTTTTTGagcaaagtaataaaaaaataattttagaatgTAACACAGGCTCAGATGCTGCATTTTACTCAGTCCTAGGATATATCAGCCTACTCGCTGTGATTTGTTTGGTGTTGGCATTTTTAGCCAGAAAGCTGCCCGATAACTTTAATGAGGCTAAAGTGATCACATTCAGCATGCTCATATTCTGTGCAGTCTGGATCACCTTTATTCCTGCATATATAAGCTCTCCTGGCAAATACACTGTAGCTGTAGAGATCTTTGCCATTTTATCTTCTGCCTTTGgtttacttttttgtatttttatgccCAAGTGTTACATCATTCTAATAAAACcagaaagaaacacaaaaaagcatATGATGGGGAAAAATCCAAAACATGCTATGTAATGAAAAAGATAtccaacacaaaataaaacataattatttgCTAGAATTGTCCTTCTGACtcctttacttattttacaccTATATAAAGTCATATAAAACTCTTTAATCACATGTATCACAAAGATGCACCACACGCACAAGGCCATATATTTGAGTTCAGTCTCTGAACATTCatctttaaattttaatttcattcaGCAATCCAACATTATTACTGTATTGGCATTTATGTGAATAATATATGCTCTAAGCATTTCAATTTTAAACTTATTAAGGCTCATTCTTAGAACTTAAAGCTTTTCTTTTTGGCAAGTAAGGCTgcaactaattacttttttagtagtcaactaatctgccGATTTTTTGTTTGATTGGTTTGGACTGTTTTGTGTAATTCCCAGCCATTTGTACTTCCTAAGGGTAAGGACAGCTAAACAATTAGGCCCAAGGCCAATTTTCAcagtacattttgatagtttgacgtatgtatattaaactaaaaat

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679819.1 True 1906 mRNA 0.38 1 28199233 28201138

Neighbor

gene id symbol gene type direction distance location
LOC103044334 LOC108264119,LOC107671059,LOC107707879,LOC107557164 coding downstream 26603 28167233 ~ 28172630 (-)
LOC103044641 v2rx3,LOC108434083,LOC108263925,LOC107730035,LOC107695206 coding downstream 32467 28161261 ~ 28166766 (-)
LOC111194794 LOC108434083,LOC108263925 coding downstream 44169 28150753 ~ 28155064 (-)
LOC111188222 LOC108434028,LOC108434027,LOC108437985,LOC108434080,LOC108433993 coding downstream 49988 28144115 ~ 28149245 (-)
LOC111194791 LOC108434028,LOC108437985,LOC108434025,LOC108433993 coding downstream 63328 28131699 ~ 28135905 (-)
LOC103043986 LOC103027426 coding upstream 91092 28292230 ~ 28293136 (-)
arhgef26 arhgef26,LOC106581462 coding upstream 192143 28393281 ~ 28482220 (-)
rap2b rap2b,LOC107757383 coding upstream 420945 28622083 ~ 28624780 (-)
p2ry1 p2ry1 coding upstream 502741 28703879 ~ 28707145 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 1210025 29411163 ~ 29446961 (-)
LOC111194796 NA non-coding downstream 8207 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding downstream 9531 28187996 ~ 28189702 (-)
G161147 NA non-coding downstream 419446 27778724 ~ 27779787 (-)
G161136 NA non-coding downstream 496005 27692435 ~ 27703228 (-)
LOC111194786 NA non-coding downstream 777549 27420486 ~ 27421684 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding upstream 1182 28202320 ~ 28202855 (-)
G161273 NA non-coding upstream 184509 28385647 ~ 28386666 (-)
G161275 NA non-coding upstream 187425 28388563 ~ 28390456 (-)
G161334 NA non-coding upstream 391027 28592165 ~ 28592552 (-)
G161363 NA non-coding upstream 526045 28727183 ~ 28727618 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 620315 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1079980 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 1853524 26342351 ~ 26345709 (-)
G160715 NA other downstream 2459871 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 2596521 25600660 ~ 25602712 (-)
LOC111194804 NA other upstream 392362 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 685773 28886911 ~ 28941387 (-)
G161711 NA other upstream 2114468 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2498032 30699170 ~ 30781708 (-)
tap1 NA other upstream 4450830 32651968 ~ 32675269 (-)

Expression


Co-expression Network