LOC103037946 (LOC108439022)


Basic Information

Item Value
gene id LOC103037946
gene name LOC108439022
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28954717 ~ 28969395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679823.1
TAGAATAAACAAACAGCTTGGAAAATTaagatatgataaaatatatcaGAGTTTAAATAGTGATCAAAAGTTAGTTCTGGAATATTAAAACTCTGatttaaacacagtgaaactgTGCTGGTGAATCCCATCCAGCTCTACAGCTTCTCTGAAACAGCGCGTAAATGACGTGGGACCCGCGGAGCTCTGCCACTGGTCGGGCTGTTTGCACGCTTTGATGTCTCTCCGGCGCGCGCGTGTCTCGCGGTCAGTCGGTTTCTGAGCCGGTGGATGAGAGGGAGAGCAGACACGCGGAGCGGAGCACGCGCTGCCCAGAGGGGCGTTACCGGGGGAGTGTGGGCTGATAGTGAAGGACTGCATTACGAGGCAGACAGTGAGGGTCCCGGGGGTCCCGTAAACAACACAGAAACAACCACACACTACAGACacgcagagacacacacaaccATGAGGATCCACCTGACAGTTCACCTTCAGATCCTGCTGGCAGTTGGCCTGGCCATCTTCTGCTTCTGCCTTGTATTGGGCTGCATCATTTGCTGGCGCCGCAGGAAGTCCTTCTCCTATAGTGACAAAGAGGCGGGGCTCTCCCTTCCCTCTGGTACTCTGGATCATGTGACTGTGACTTTAAGTCCTTCCCCATCCATCAATGTCCTACCCATCAAACAACAGTATGAAGAGCTTGACGGTGATGTATTGGACTATCCACCTCAGGACAGCAGTTCCACTCCCTCAGAGGATGACCTGAGCTCTCTTTCACGTGTCCAGGTGGATCCAAAAGGGCCTCAGAAGTCTAGCTTCCCCCTGCGGCGCCTCAGTTCGCCGGTTCTGTGTTCCTCTCCCTCTAAACTGTCCGTCCGTGGCCGTGCCTCCCTCCCCAGCATCCCTAAACTCGGCCTGGTGTCTAAAACCCGCCGCGCCTTGGACCGTCGCTCCACAGTGGCTGGCGACAACTTCTTGTGCACAGAAAACAGCAAGCTGACCAGTGGCGACCAACAGGGGGCGCTGTCTTCATCCCCATATGGCTCCAGTCCACAGTGGGAACCATCGTCGCCTAAGTACGGCTCCAGCTCCAGACGCAGTTCCATTTCCAGCAAGCAACCACCATCCCTGCACTTTACCCTGCTCTTCTCACCAGCAGAGGGCACTCTTACAGTCACAGTCCTGGGGCTGTTCCGGGCTTCCCGCAGGGTAAGTGGGGCAACAGTCCGAGCCAGTTTGCCCCCTGTCTGCCCAGCTGCCCTGCAGGGGGTTCCAGCACGGAGGCACAGTCTGAGTCCAGAGCCCCAGGCTCAGGTCCTCACCCTGCAGGCTGGCTCTCTGGAGGAGCTGAAGTCCTGCACACTGAGGCTGGTCGCTTACGGCAAAGATTTCTCCGGCCTCCGGGAGACGCCACTGGGGGACCTGGAGCTGACCTGTGCAGAGATGGACTGGGAAGCAGACGCAGCTGTCATGTACAACCTCCAGCTCAACCCAGCAAGGAGGAGGctcaaaaagAGTCAGAGCACTCAGGAGTCACTGGGCAGTCTGAAGGTGTGTCCCTCCAGACCCCTGGGTCAGCTCTTCATCCTGCTCCAGTACCAGACGCAGGCCCAACGCATCAAAGTAATGGTGCGCAAGGCGGAGAACCTGGCCAAGCTAACTAGAATGCCCGGAGCTGCAGATCACTACGTTGTCATCAACCTGCGGCAGGGTGGGAAAGTGATCTGCACTAAGGAGACGAAGGGAGCGAGTGGCTCTAATGCGGTTTGGAACGCACCTTTCCTGTTCGACTTACCAGCTGGTGACATCGTCAGGCTTTCATTGGTCTTGGAGTTCATCGTCATGCAGGGGAGGCTGTACACAAAAAGCTGTGTCTTGGGCCGCGTTCTGATTGGTTACGAGGGTCCGGAGGCGGGGCAGCAGCACTGGAAAGAGATGTGTGATCGAGGGCAGGTGGAGACCGCACGCTGGCACACACTCCAGCCAGATACACTGTAGGACTGAGTCTTAATGATGGACATTAAACCCCCAGATCATGTGGGTTTTGAAGCATTCTCCACTGCCGTGGCCTCTGTCCGGGCTCTGAGTAGTGAACGgaactgtagagagagagagagagaaccagctGAAAAAACTGTCCACAAGGCTGGTTATAATGTGAGTGTCTGTATATGAATTGtaagtactgtatttattaatgaACAATGTGAATAGTTGCAGATATTTTTTCCAGATTCTCTCAAAGGAGTGCCAAACTAGCTTTGTGGCAATGTGTGGAAATAGTGTTGAATTTTGTGAGATATGAAAAGACTTGATGATGAATATGATGGCTGTCTGTATGTGCATGTCTTCGTTTTGATGTCTCGTTCTGTCTTGGTTCACTTGGTGTTGTAAGACATTAAAGTAGCTGCTGCCGAACTGTCCAATCAGAAAGTTATAGAGCAATGGTTTGGCCAAGAATTCCCAAAACATATACTTTTAGTTTTGTACCGTTTTCACTCCTGATATGAGATGTATTCAGCCAGAACATCTGATTTTTGGCCAAATTATTGCTTTAGAATACAGCTATTGGTTGTGTGTATTTCTCTGACTGCATGTTTGATACTGGAAGTAAACTTCATTTCTTGTGGTGTTGAACTCTCCACTCTGACGAAGGCTGGCATTAcatcaataaaatgaaaatattatctatattatcCATAAA

Function

NR:

description
PREDICTED: synaptotagmin-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679823.1 True 2686 mRNA 0.52 5 28954717 28969395

Neighbor

gene id symbol gene type direction distance location
arid3b LOC108439030,LOC108264089 coding upstream 95621 28768606 ~ 28859096 (+)
dhx36 dhx36 coding upstream 568300 28300719 ~ 28386417 (+)
gpr149 gpr149 coding upstream 671399 28255972 ~ 28283318 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding upstream 759003 28185750 ~ 28195714 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding upstream 769810 28180682 ~ 28184907 (+)
LOC103022881 LOC108439021 coding downstream 48665 29018060 ~ 29063139 (+)
LOC103023184 NA coding downstream 164233 29133628 ~ 29143190 (+)
LOC103038575 LOC108439020 coding downstream 182901 29152296 ~ 29159185 (+)
LOC111194800 NA coding downstream 230054 29199449 ~ 29200211 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 250071 29219466 ~ 29307913 (+)
G161313 NA non-coding upstream 64473 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 65591 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 67917 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 190674 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 302408 28643321 ~ 28652309 (+)
G161414 NA non-coding downstream 232958 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 238568 29207963 ~ 29208290 (+)
LOC111194801 NA non-coding downstream 240869 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 363716 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 514119 29483514 ~ 29490820 (+)
fam219b fam219b other upstream 195710 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 329932 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1158213 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1835453 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 2047090 26905244 ~ 26907627 (+)
G161331 NA other downstream 101425 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1384291 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1885163 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1905643 30875038 ~ 30878327 (+)
efhb NA other downstream 2615351 31584746 ~ 31605490 (+)

Expression


Co-expression Network