LOC103023184


Basic Information

Item Value
gene id LOC103023184
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29133628 ~ 29143190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679824.1
GGTGGATGGAGCAGGTGAGAGAGCGTAACTCTTACCCTATTACCTAAAAGCACTGTTATGGTGGTAACTGGAGGCACAACCAATCGCGTGAGGGGCCGCTATATAAAATAGGAAGGCCTTCCAATTCTGCTACGATTCATCCGTGCCCAACAAACTGATTCAGCACCCCCAAACACCAGAGAATATCAGCCTGAACATTGCTGCTGGAGTTTCTTACTGACAGCAAGAAGAAAGCAGAAGAAAACATGTCGCTGAGATTCTTGCCCTTCTTCGACTCCATCTCCATCTCGGAGGGCCTGGTGGCCATGGTGACGATCTGCATAGTGTATATCCTGCTTCAAAAGAGTCGAGTAAAGATCCCTGAGGGTCTTAAGCAGCTTCCAGGTCCACATTCCCTTCCCATCATTGGGAATTTGATGGAACTTGGGTGGAACCCCCACCTCAGCCTGACCGCCATGAGCGAGCGCTTTGGCCACGTCTTTAAGATCCATATAGGGAGTCGACCCGTGGTGGTGCTGAGCGGCAGTGAAACTGTGCGGCAGGCACTCATCAAGCAGGGAGATGAGTTTGCTGGACGGCCAGATCTGTACAGTTTCCAATACATCAATGATGGCCAAAGCCTGGCCTTCAGCACAGATCAGGCTGGGGTGTGGCGCCATCGCCGTAAGCTGGCCCAGAATGCCCTGCGCTCTTTCGCTACCCTGAAAGGCCAAACCCCTGAGTATTCCTGTGCCCTGGAGGAGCACATCAGCAAAGAGGGGCTGTACCTGGTGGAGAGACTGCGCAAAGTGACAAAGGCCGACGGCTGCTTCGACCCCTTCCGCCACATTGTGGTCTCTGTGGCCAACGTCATCTGTGGCATGTGCTTCGGCCGGCGCTACAGCCACGACCACGAGGAGCTAGTGAGTCTGGTGAACCTGAGCGACGAGTTCGGACAGGTGGTCAGTAGCGGCAACCCTGCTGATTTCATCCCTTTCCTCCGCCTCCTGCCAAGCAAGACCATGAAGAAGTTTGTGGACATCAACAATCGCTTTAACAAGTTTGTGCAGAAGATTCTCAGAGAGCATTACGAGACTTACGATAAGAACAACATCCGTGATATCACAGACTCCCTCATTGATCACTGTGAAGACAGGAAGCTGGACGAGAACTCCAATGTCCAGGTATCTGACGAGAAGATAGTGGGGATAGTGAATGACCTTTTTGGTGCTGGTTTCGACACCATCAGCACTGCTTTGTCGTGGTCTGTGATGTATCTGGTGGCCTATCCAAAGATTCACGAGAAACTTTATCAGGAGATGATGGAGAAGATTGGAACAGGTCGTACACCTCAGCTTTCAGACAAAACCAACCTGCCCTATCTGGACTGTTTCATAACAGAGGTCTTCCGCCACTCCTCCTTCTTGCCTTTCACCATCCCACACTGCACCTCGAAAGACACATCGCTCAATGGATACTTCATTCCCAAAGATACGTGCGTGTTCATCAACCAATGGCAGATTAACCACGACCCAGATCAGTGGAAAGAACCCTCCATGTTCAACCCAGACCGTTTCCTGAGTGAAGACGGTGTCGAGATCAACAAAACCGAAGCTGAGAAGGTCATGGTGTTCGGTCTGGGCAAGCGGCGCTGCATCGGCGAATACATCGGCCGCTCCGAagtcttcctcttcctcaccaTCCTCATCCAGAGACTAAAGTTCAGCAGCTTGCCAGGAGAGATGCCAGATATGACCCCCATATACGGCCTCACCATGAAGCACAATCGCTGCATGCTGACCGTCGCTCCGCGGCCAGGCTTTGAAGAGTTCTGCTCAGAGAGTCTGCACTGAGCCAGCTAACGGCCGGTGGCTGAATTTATCCAGCTACAAATAAACCATTTGGCCATTTGAGCTTGTGAAAACCTACAGCTtaagctagctagttgtctGATAAAGTAACCAGTTTGAGGAGGTATTATATTGGTTGTTTCAATACTTGCCTACTTCTAAAAAAACATCTGTTAACATAATTAACCACAGTGTGTATAAAATCAACTCAAACTACACAGATATctcaaacacttaaaataaataaatgttcattGTGCTAATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07408 CYP1A1; cytochrome P450 family 1 subfamily A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679824.1 True 2094 mRNA 0.50 8 29133628 29143190

Neighbor

gene id symbol gene type direction distance location
LOC103022881 LOC108439021 coding upstream 70489 29018060 ~ 29063139 (+)
LOC103037946 LOC108439022 coding upstream 164233 28954717 ~ 28969395 (+)
arid3b LOC108439030,LOC108264089 coding upstream 274532 28768606 ~ 28859096 (+)
dhx36 dhx36 coding upstream 747211 28300719 ~ 28386417 (+)
gpr149 gpr149 coding upstream 850310 28255972 ~ 28283318 (+)
LOC103038575 LOC108439020 coding downstream 9106 29152296 ~ 29159185 (+)
LOC111194800 NA coding downstream 56259 29199449 ~ 29200211 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 76276 29219466 ~ 29307913 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 227875 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 255222 29398412 ~ 29401581 (+)
G161313 NA non-coding upstream 243384 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 244502 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 246828 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 369585 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 481319 28643321 ~ 28652309 (+)
G161414 NA non-coding downstream 59163 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 64773 29207963 ~ 29208290 (+)
LOC111194801 NA non-coding downstream 67074 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 189921 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 340324 29483514 ~ 29490820 (+)
G161331 NA other upstream 16833 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 374621 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 508843 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1337124 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2014364 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1210496 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1711368 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1731848 30875038 ~ 30878327 (+)
efhb NA other downstream 2441556 31584746 ~ 31605490 (+)
G162017 NA other downstream 2925672 32068862 ~ 32148190 (+)

Expression


Co-expression Network