LOC103022881 (LOC108439021)


Basic Information

Item Value
gene id LOC103022881
gene name LOC108439021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29018060 ~ 29063139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679825.1
TGGAGTTTCAGCAGCAGAGTTTCAGCAGCGCGAGCAGGATCAGCGCGCGCGACCATGAGAGCAGCTCCACCTGTAATTCATCTAATGAGGCTGAAATTAATCTAATGGGGCTGTAATTAATGCCCAATTAACCCGGATTTAGCCTTATTTAGCCGGTATCAGCTCGCGGACGCTGATTGGAGCCGGGTTTATCCTCGCGCTGCGGAGAAAGTGAGGAGCGTCATGTCCCGGGTTCCCCGCGCGGCTCTCGCGACCGTCCTGCTGCTGTTCAGCGTGCTCTCACTTCGCACGTGCTCTCCCGACACCGCCGACAGAGAAGAGTGTCCAGACAATAACATCATAACTGTGGAGTATCCGTGCGTTAGAGCTGAAGGCCTGGCCAGCACATGTCTTAGgcggAAGTGCTGTAAGGGGTTCAGGTTCGTGATGGGACAGTGTATACCCGAAAGTGTAGATGTGTGTGCAGGTTCTCCGTGTGAGCAGCAGTGCACGGATAACTTTGGGAGGGTGGTGTGTACCTGTTATAATGGATACCGCTTCGACCGGGAAAGACATCGACAGCATATCCACCCATACTGCCTGGaTGTGGATGAGTGTGAGGAGTCTAATGGAACATTGTGTGAACACACGTGTGAAAACACACCGGGGAGTTTCCGCTGCCGATGCAGAGCTGGTTACACACTGGCCGCAGATCAGCGCTCCTGCATACCTGCACACAACAtctctttctctcactcagcaGGCTCTGCAGGGAAGTCTGATAATCAGATGAGTGCTGGCTCCTGCTCCCTGACCTGCCAGGACATCATCAACATGAGGACCAGCCTGCAGCAGCTCAAACTCCGCAtcggacacacacactcacctggacagATGCCATCAACTGGCTTAGCAAATGGCAGTGAAAAAACACTTCCTGCTAGGGTTGGGAAGAATTCTGATAGCCACCCCCCCTCCGGACCTCCAGGAGCACCTGGACCCCCAGGCCTGCCAGGACATCCAGGGCCTCCAGGGCAGAAGGGGGAGCCAGGAGCCCTGGGCCAGCCGGGCCCTCAGGGGCCCAGAGGGGATATGGGACCAATGGGCCCCCAGCCTGACCTGGAGCACATCAAACGAGGACGCAGAGGACCAGTGGGACCTCCAGGAGCACCTGGAACTGACGGACTTAAGGGAGACAGAGGTGCTCCTGGACCCCGGGGCCCACCAGGACCACCAGGCTCCTTCGACTTCCTCTTACTCATGATGGCCGACATCCGCCACGACATCATCGAGCTGCAGGAGCAAGTGTTTGGGAAGAGGCGGGACTTAAATTTGGACATGACTCCAAATTCTGTGGGGGAGGCGGAGCTTGAAGACTGGGGTTCAGGAGAGTCACTGCTTAATACGTGACGATCTGCTGACTAAATCTGAAAGTAATAATCAAATTATCAAAAGGACCCAAAATCTATGGAGGGCCAGGAACTGAATCAAGCCCTGCTATAAGACAACTTTGGATCCAAAATCAAGGGGTTGCCTGCAGTTTCCTCTTTGTCACTGTAGTGAGAGCTGGAACAACACAACACTAGTGCCTGGATGGACTGTAGAGGGCGCTGGAGAGGCCAGATAAATTGAGAAAGCACAAAAGAAAGACTGTTAATATTAAACTACTACCAACTTTA

Function

NR:

description
PREDICTED: collagen and calcium-binding EGF domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679825.1 True 1658 mRNA 0.54 11 29018060 29063139

Neighbor

gene id symbol gene type direction distance location
LOC103037946 LOC108439022 coding upstream 48665 28954717 ~ 28969395 (+)
arid3b LOC108439030,LOC108264089 coding upstream 158964 28768606 ~ 28859096 (+)
dhx36 dhx36 coding upstream 631643 28300719 ~ 28386417 (+)
gpr149 gpr149 coding upstream 734742 28255972 ~ 28283318 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding upstream 822346 28185750 ~ 28195714 (+)
LOC103023184 NA coding downstream 70489 29133628 ~ 29143190 (+)
LOC103038575 LOC108439020 coding downstream 89157 29152296 ~ 29159185 (+)
LOC111194800 NA coding downstream 136310 29199449 ~ 29200211 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 156327 29219466 ~ 29307913 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 307926 29371065 ~ 29391966 (+)
G161313 NA non-coding upstream 127816 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 128934 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 131260 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 254017 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 365751 28643321 ~ 28652309 (+)
G161414 NA non-coding downstream 139214 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 144824 29207963 ~ 29208290 (+)
LOC111194801 NA non-coding downstream 147125 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 269972 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 420375 29483514 ~ 29490820 (+)
fam219b fam219b other upstream 259053 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 393275 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1221556 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1898796 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 2110433 26905244 ~ 26907627 (+)
G161331 NA other downstream 7681 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1290547 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1791419 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1811899 30875038 ~ 30878327 (+)
efhb NA other downstream 2521607 31584746 ~ 31605490 (+)

Expression


Co-expression Network