LOC111194800


Basic Information

Item Value
gene id LOC111194800
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29199449 ~ 29200211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679826.1
ctaagtttttttaaggagtaatcagtaatcggattactttttcaaagtaactataccatcactgctctAGGCTGTGTCATATATGCTTATCAGTTTAACCCTCTATTGTTTCCTGGGCTTGTAGAGCTGATGTCATGTAGGATTTTCTGGTATGAGAGAGGCAGTCAGACAGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttttcgttatgATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAgtctatgactcctgcaagtttgggcaaatttcactgtattgtttattttatatta

Function

GO: NA

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679826.1 True 522 mRNA 0.42 2 29199449 29200211

Neighbor

gene id symbol gene type direction distance location
LOC103038575 LOC108439020 coding upstream 40264 29152296 ~ 29159185 (+)
LOC103023184 NA coding upstream 56259 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 136310 29018060 ~ 29063139 (+)
LOC103037946 LOC108439022 coding upstream 230054 28954717 ~ 28969395 (+)
arid3b LOC108439030,LOC108264089 coding upstream 340353 28768606 ~ 28859096 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 19255 29219466 ~ 29307913 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 170854 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 198201 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 248939 29449150 ~ 29473681 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 276474 29476685 ~ 29486014 (+)
G161313 NA non-coding upstream 309205 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 310323 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 312649 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 435406 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 547140 28643321 ~ 28652309 (+)
G161414 NA non-coding downstream 2142 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 7752 29207963 ~ 29208290 (+)
LOC111194801 NA non-coding downstream 10053 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 132900 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 283303 29483514 ~ 29490820 (+)
G161331 NA other upstream 82654 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 440442 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 574664 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1402945 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2080185 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1153475 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1654347 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1674827 30875038 ~ 30878327 (+)
efhb NA other downstream 2384535 31584746 ~ 31605490 (+)
G162017 NA other downstream 2868651 32068862 ~ 32148190 (+)

Expression


Co-expression Network