csk (csk,LOC108264088,LOC106562350)


Basic Information

Item Value
gene id csk
gene name csk,LOC108264088,LOC106562350
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29219466 ~ 29307913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679827.1
CGCATGCGCGTTGGGCGCCTGAGCGGAACGGAGACCATTTCCTCCTGCGCGGGCCTGGGCGGCGGAGTCGGCGGCTTTTCTGGCTTCTCAGGCTGTGGATGTTACCGTGACCGAGCCCTGGTACAGGACTCCGCGCTCAGAATCTCTCCAGCCTGCGTTCCTGAAGAGATATTCGGCGAGCTCTGATGCTACCTGTTACTCTGTAACACCTGTCAGAGGAAATCGCAGCCCCGCCCCCTTCCCTTCCCACACTCAGAATGTCTGGTCTACAGACAGCATGGCCGCAAGGCACAGAGTGTGTGGCTAAGTATAACTTCCAGGGCACAACGGAGCAGGACCTGCCCTTCTGCAAAGGAGACGTTCTCACCATCATTGGAGTCACCAAGGACCCAAACTGGTACAAAGCCAAGAACACAGTAGGCAGGGAGGGAACGATTCCAGCAAACTACGTCCAGAAACGAGAAGGAGTGAAATCAGGAGGCAAACTGAGCTTAATGCCATGGTTTCATGGTAAGATCACGCGGGACCAGGCGGAGCGGCTGCTGTACCCGCCGGAGACGGGTCTGTATCTGGTGCGGGAGAGCACCAACTACCCTGGCGACTACACGCTGTGTGTGAGCTGCGAGGGGAAGGTGGAGCACTATCGCATCATCTACCACAACGGCAAACTCTCCATCGACGAGGAGGAGTTCTTCGAGAACCTCATGCAGCTGGTGGAGcatTACACCAAAGATGCAGACGGACTTTGTACTCGACTGATCAAGCCAAAGTTGATGGAGGGGACGGTAGCAGCCCAGGATGAGTTCTCCAGAAGTGGCTGGGCTCTAAGCAGGAAGGACCTGAAGCTTATACAGACCATCGGCAAAGGAGAGTTTGGAGATGTAATGGTGGGAGACTACAGAGGGACCAAAGTGGCAGTGAAATGTATCAAACACGACGCCACGGCACAAGCCTTCATCGCTGAGGCCTCAGTTATGACGCAGCTGAGGCACAATAACCTGGTGCAGCTGTTGGGAGTGATTGTAGAGGAGAGAGGAAGTCTCTTCATCGTCACTGAATACATGGCCAAGGGCAGTCTAGTGGATTACCTGCGCTCACGAGGACGCACCGTGCTGGGAGGAGATTGCCTGCTCAAATTTTCACTtgATGTGTGTGAAGCTATGGAGTACCTCGAGGTGAATAACTTCGTGCACAGGGATCTCGCAGCTCGGAACGTTCTGGTTTCCGAAGACAACATCGCTAAAGTCAGCGACTTCGGTCTGACCAAGGAAGCTTCGTCCACCCAGGACACGGCCAAGCTGCCTGTTAAATGGACGTCACCGGAGGCACTCAGAGAGAAGaGGTTTTCCACAAAGTCTGACGTGTGGAGTTACGGAGTCTTGCTTTGGGAAATCTACTCTTTTGGACGTGTACCTTACCCAAGAATTCCGCTTAAGGAGGTGGTGCCGCGGGTGGAGAAGGGCTATAAGATGGACGCGCCGGACGGCTGCCCGGCCGTGGTGTACGACCTGATGAAGCAGTGTTGGACCCTGGACTCCGTGATGAGGCCATCGTTCCGGATGCTGCGCGAGAAGCTGCAGCACATCAGAGCTAAAGAACTCTATCTGTGAGCCCAGCGCCAGGGAGGGGGCTTCACCCAGGAGGAGAGGTTGTAGTAGGGAGGTTAGGAGTCGGGTggagcagcagcggcggcggccTCCTGGAAGCAGAACGTCCAGAAAGGTCCAGGATGTGTCCGTCACCAACGAGCAGCGAAGCTTGAGAAGAGGCTCTGGGTTTTTGCTTTCGTTCTCTTTCGGACTTTTATTGGACTGTTGATCTGGACGCACTCGCGATGTGTTTCTGTAGACAGAGGAGGACCTTACTAGACctccttttgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtaagagagaatgaatgtgtgtgggtgtgtgttaaaGCGTCCTGATGATATCTGTTTCTtcagccttttttttgtttgtcatttttcCATGCCAATATCATAGTgttgcctctctctttctctctctctctctctctctctctctctctcttacacacacagtccctccctctctccccccttcctgtctctctccttcctccCACACACTCTCCTTCCCTTTCACTCttgtctttccttttctctcactcgtttttttttttcagcatgacatTAATGGGAGGAAGGCTGGCCTTTTCTCCGTTGTTGTGTCAGGTGCTTTTCTTTATCTGTCTCAGTGACATgctagctttctctctctctctctgtctctctctctctttctccttccttctcttccctatctctctgtctcttactcttTTTTGCACATACACGCTCTCTCAAACTCTcaggctacattcacacagcaggttaaagtggcccaaatctgatttttctcACCAAATCGCAAAAGAAGAAATGCTTCGtgtaaagtttcagtttcatcttttCCAGCATCACTTAAGCGCTATCAAATACCATAGTTTGAGTTCCAGTAAGTAATAGAAGGGCTTGCTGTAAAAAGGACACATTAAGGTTAAAGGaaatggccattttattaggaaCATACAGTGGTTGCGATCCTAATTCCCTAAGTCTTCTAATTAAGTAAGACTACACCCAGGACTGTTACCAGTTTTGAGGTCATTATCCCAACACTGAACCCCTCACTCATTGCTGAcatctattttcttttctccttgatgtaaaaatattaactgACTTCAGCTCTGGCTGTTTAGTCCGAGTCGCATTTTGGTGCCGTGTAATATAAAAGTGGCTCTGACTGGAATTCagtttcagtgtgtttatgctgttcacactgccacacagaTCTGTGCCACACATGATGATATTCCTGCTGTGTGGACGAAGCTTTTGTCTCTCGTTGTATCTCACTTTTTTGCGCTTTTCCCTCTACTGTCATTATTTTCTCTTGCATTCTGTCTCTCACaccctctcattctctttcacactctctcttttgctcttacTCAAgcattttctctctgtctcactgtgGCTTCTGTCTGTACCTCAGATTTCTCTTGTGTTGTGTGGCACGGGTTCTAGGTTCTAGCTACATGCTTATCCTGTGAGTGAGTgtatgtaagagtgtgtgtgtgtgagagagagagagaggcgttCGCTCTGTGCCAAAGTGCCTCCAGATGGCAGGGCTGATGCGTCTCGTTTCCCTTCCGCTGCCacactgattttttgttttgttttgtttgtttgtttgtttttgtttgtttttattctcttttttatcattttttttaacagtcgTCTTTTTTGGTTGTTGTTGATTTGTCTGTTTGCTTATTTGCTGTCTACATC

Function

symbol description
csk Predicted to enable non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within convergent extension involved in gastrulation. Orthologous to human CSK (C-terminal Src kinase).

NR:

description
PREDICTED: tyrosine-protein kinase CSK

GO: NA

KEGG:

id description
K05728 CSK; c-src tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679827.1 True 3360 mRNA 0.49 13 29219466 29307913

Neighbor

gene id symbol gene type direction distance location
LOC111194800 NA coding upstream 19255 29199449 ~ 29200211 (+)
LOC103038575 LOC108439020 coding upstream 60281 29152296 ~ 29159185 (+)
LOC103023184 NA coding upstream 76276 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 156327 29018060 ~ 29063139 (+)
LOC103037946 LOC108439022 coding upstream 250071 28954717 ~ 28969395 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 63152 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 90499 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 141237 29449150 ~ 29473681 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 168772 29476685 ~ 29486014 (+)
lrrc49 lrrc49 coding downstream 213864 29521777 ~ 29598907 (+)
LOC111194801 NA non-coding upstream 4731 29210264 ~ 29214735 (+)
LOC111194803 NA non-coding upstream 5802 28652552 ~ 29213664 (+)
G161417 NA non-coding upstream 11176 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 16877 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 329222 28889370 ~ 28890244 (+)
G161425 NA non-coding downstream 25198 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 175601 29483514 ~ 29490820 (+)
G161484 NA non-coding downstream 194207 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 312484 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 317110 29625023 ~ 29646905 (+)
G161331 NA other upstream 102671 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 460459 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 594681 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1422962 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2100202 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1045773 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1546645 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1567125 30875038 ~ 30878327 (+)
efhb NA other downstream 2276833 31584746 ~ 31605490 (+)
G162017 NA other downstream 2760949 32068862 ~ 32148190 (+)

Expression


Co-expression Network