LOC103023825 (tarsl2,LOC108413626)


Basic Information

Item Value
gene id LOC103023825
gene name tarsl2,LOC108413626
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29449150 ~ 29473681 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679828.1
GAAAGGGGGATTTAAACATGGCGGACCGCATGGCGGCACGTTTAGCCGCTCAGGAGCGGCAGATCGAGGCTCTGGGGCGGGAGATCGGCCGCCTGCGGGACGGGCTGGTTAGCGGGCAGGTCGCCGCGGAGCTGGCGAGCAGCGCTGAGCTGGAGAACCTGCGCAGCGAGAACGAGAAGCTCAGATACCGGCTGATACACCTCCGCCGCGGCCTGCAGGCCGAGCCGGGACCGGGACCGGGACCGGAGCCGCGCCGAGACCCAGAGCCCggtaacaccaccaccaccaacaacaacaacaacagcgtTCAGGAGAAACAGAGGAGCACCAGAGAAACAACCTCCAGAGACACAGCCCAGAACAAGAATGCTGCTCTGCCGAAAACTCCAGATGCCCAAAATGCAGCAGAGAAGAGCAAAAAGAAGGAGAAACCCAAAGGAGAAGCTGGAGCGGgagaaCTAAAGCCTTGGCCGAGCTACATCTCCGAGCGCTTAGAGCTGTACAATCGACTGAAGAAGGAGAGCGACGCCATTCTGGCCAAGCAGGCGGCTAACAGCCAGCCCATTTCAGTCGTCCTGCCTGATGGACAGAAAGTGGAGGCTCAGTCTTGGATCACCACCCCATACCAGCTGGCCTGTGGCATCAGTCAGGGTCTGGCTGATAACTGTGTGATTGCCCGTGTGGACGGTGGCCTGTGGGATCTGGACCGGCCGCTGCAGAAGGACTGTTCACTGGAGCTTTTGCGCTTCGACCATGAAGACGCCCAAGCCgtataCTGGCACTCTAGTGCTCATATCCTGGGTGAAGCTATGGAGCGTTTCTATGGGGGCTGCCTCTGTTACGGGCCACCCATCGAAAACGGCTTTTACTACGACATGTTCCTGGATGAGCAAAAAGGAGTGTCGAGCACTGAGTTTGGAGATTTAGAGACACTTTGTAAGAGCATTATGAAGGATAAACAGCCATTTGAGAGATTGGAGATCAGCAAAGAAACACTACTAGAGATGTTTAAGtataACAAGTTTAAATGTCGTATCCTGAACGAGAAAGTGGAAACTCCAACCACTACTGTTTACAGATGCGGTCCCCTCATTGACCTGTGTCGAGGTCCTCATGTACGTCATACTGGCAAGATTAAGGCACTAAAGATCTACAAGAACTCAGCCACATACTGGGAAGGCCGCTCAGACATGGAGACCCTTCAGCGCATCTACGGCATTTCTTTCCCCGACAGCAAGATGCTGAAGGAGTGGGAGCGCTTTCAGGAGGAGGCCAAGAACCGAGACCACCGCAAAATTGGAAAGGATCAGGAGCTGTTCTTCTTTCATGATCTGAGTCCAGGCAGCTGTTTTTTCCTGCCGCGGGGGGCCTACATCTACAACACTCTCACTGAGTTCATCAGGGAGGAGTATTGGAGGAGAGGATTTCAGGAGGTGGCTTCACCCAACATCTACAACAGTAAGCTGTGGGAGACGTCGGGTCACTGGCAGCACTACAGTGAAAATATGTTCTCCTTCCCTGTGGAACAGGACGTCTTCGCCCTCAAGCCCATGAACTGCCCTGGACACTGTCTGATGTTTGGCCACCGGCCGCGGTCCTGGAGAGAGCTTCCCCTCAGGCTGGCAGATTTTGGTGTGCTGCATCGTAACGAGCTCTCTGGTACACTCACTGGACTCACCAGGGTTCGCCGCTTCCAGCAGGACGATGCTCACATCTTCTGCACTATGGAACAGATTGAGTCAGAGATGAAGGGTTGTCTGGACTTCCTGCGCTGCGTCTATGATGTATTCGGCTTCTCCTTCCAGCTACATCTCTCCACCCGGCCTGAGAAGTTCCTCGGTGACATCGCTGTCTGGAACCAGGCTGAAAAGCAACTTGAAAACAGCTTGAATGAGTTTGGTGAGCCTTGGAAACTAAATCCAGGGGATGGAGCATTTTATGGGCCAAAGATTGACATCAATATTAAAGATGCCATCGGGCGCTATCACCAATGTGCCACCATTCAGCTGGACTTCCAGCTGCCTATTCGATTTGACTTGACATATGTGGGGAAAGATGGAGATGACAAAGCCAGGCCGGTTATTATCCATCGTGCTATTCTGGGCTCAGTAGAGAGGATGATTGCCATTCTTACAGAAAACTATGCAGGAAAATggccaCTGTGGTTATCCCCACGTCAGGTGATGTTAGTGCCTGTTAATCCATCCCTTGAAGAATACGCCAGTAAGGTGTGTAAGCAGTTTGTAGAGGCGGGCTTCATGGCGGACGCAGACCTCGACTCCAGTTGCCTTCTGAACAAGAAAATTCGCAATGCTCAGCTAGCTCAGTACAACTTCATTCTAGTGGTGGGTGAGAAGGAGAAGATGACTAACAGCGTCAACGTGCGCACGAGGGACAACAAGGTCCACGGAGAACTGACTGTGGCGGAGGTTCTGGCCCGGCTTACTCTCCTTAAACAGTCCCGGTGCAGGAATGCAGAGGAAGttttctaaactaaaactctGGCCTGATCTCAGTTTAAAGGAACCAGTAGCTCTCATTCATAGATTGGATAcctaaaagtataaaaataatcatttaatttcAAACAAATTAATATATAGGGCATCTGCAGCATTTGACAATAGTTTTAACACATTTCCTTGTATAAAACGAAATTCTGTTGACTTCAACCTCGCATAGAAAGATCATCTGTTGCTGAGAAAGTAGCTGAAGTCTATGAATAACTATTTGTGtgactatatacagtatatagctgTTACAtcctaatatataaaaaaatgaccaaATATCCTATTTTCGATTTTTGACAGGACTGCTAAATAATCAATTCCACTTTAATCTGAAGATTGTTtagaagcatttctattggtccacacCTCGTAAAATTGACATGatcttggtgtttttttttaaatcatgtaaGAAAATGGTTGAAAATAGAGATACAAAGTTTtattcacacaaaaaatattgtgtgaTCAATATTGTAAGATTCATGGCATTAAACTTCACCAGATACAAGGAAACACATTAAAACTATTGCCCATGGCAATCAACTGTACAGCATAcagtaaatcaaatcaaatgctTAATTAGGGTGAAAAACACTGAAGTAGCTCCTTTTAAAAACCTGTTTATGAAACTGTGAAGGTTCTTTTTCCTGTTTTGAACTGGGATCATGTTATTTAGAGCTTTGCTCAGTTAAGGCAGAAAGGACATGGTAAAACGCAATGCAGAAAGTAATGTTAGATATAGAAAAAGGGACAGACGGAGTTCTGCGGAGGAAATGGCGGCATTAGAAGAAAGCCATTCATGATGGATTTGAGATTGTATGAAATGTCTTTATGTAACAAGGCAGAATAATTTTTCAGTGCATATAAAATCTCTCAGTTCTGTAGGCACGTGGGAAGGCAGGCTGGCAGAGGTGGCGTTTTGGCTGGAGCACTTGTGAAAATGTCTACAAAATGTCTTCACTTTGATGCAGTTTTGTGACATACACTAAATGCTTGCATATAaaagtacatacagtacaatgAACGGTCAGTCTGTAATATTCAAAAATTGTGTTCCAGTAAAGGGAAAAGTTGATGTTACGTGACGATGGGAAGTAAATGTGAAGTAAATAATGTCCTGCTGCTATTTATGAAGAATAAAAGCCTTTTCAAAAACAAA

Function

symbol description
tarsl2 Enables threonine-tRNA ligase activity. Involved in threonyl-tRNA aminoacylation. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and urinary system. Orthologous to human TARS3 (threonyl-tRNA synthetase 3).

NR:

description
PREDICTED: threonine--tRNA ligase, cytoplasmic-like

GO: NA

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679828.1 True 3675 mRNA 0.47 19 29449150 29473681

Neighbor

gene id symbol gene type direction distance location
LOC103039409 NA coding upstream 47569 29398412 ~ 29401581 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding upstream 57184 29371065 ~ 29391966 (+)
csk csk,LOC108264088,LOC106562350 coding upstream 141237 29219466 ~ 29307913 (+)
LOC111194800 NA coding upstream 248939 29199449 ~ 29200211 (+)
LOC103038575 LOC108439020 coding upstream 289965 29152296 ~ 29159185 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 3004 29476685 ~ 29486014 (+)
lrrc49 lrrc49 coding downstream 48096 29521777 ~ 29598907 (+)
thsd4 thsd4 coding downstream 132376 29606057 ~ 29715602 (+)
LOC111194806 NA coding downstream 255669 29729350 ~ 29734672 (+)
LOC111194842 NA coding downstream 267380 29741061 ~ 29743027 (+)
G161425 NA non-coding upstream 94859 29333111 ~ 29354291 (+)
LOC111194801 NA non-coding upstream 234415 29210264 ~ 29214735 (+)
G161417 NA non-coding upstream 240860 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 246561 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 558906 28889370 ~ 28890244 (+)
G161476 NA non-coding downstream 9833 29483514 ~ 29490820 (+)
G161484 NA non-coding downstream 28439 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 146716 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 151342 29625023 ~ 29646905 (+)
G161508 NA non-coding downstream 183009 29656690 ~ 29657488 (+)
G161331 NA other upstream 332355 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 690143 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 824365 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1652646 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2329886 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 880005 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1380877 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1401357 30875038 ~ 30878327 (+)
efhb NA other downstream 2111065 31584746 ~ 31605490 (+)
G162017 NA other downstream 2595181 32068862 ~ 32148190 (+)

Expression


Co-expression Network