lrrc49 (lrrc49)


Basic Information

Item Value
gene id lrrc49
gene name lrrc49
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29521777 ~ 29598907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679832.1
AATATTAGAACAGCTAGCGTTAGTTAAATTAGGTTAAATATTTTAACGTTTTATGTTTTAGgggttatttgtttataataataaaataaaaatagccatGAACTACCTTTACACACATTCAGAGCTAAAGCAGATATGttttactctttaaaaagaGGGTTATAAGAAAAAACAGAGCGAGAGCTGCAGTTTAACAGTTAGTTAATTGACGTTACTGAGCTAACCAACTAGCGTTAGCTATTTAAGCTAAGAGAAACGCTCCGGCTTTAGGCGGTTTAGttgattttctgtatttttaatttattgtgttgaaAATGCGCTCTAATAAGCAACAGGGCAGCACACCAGGACACTGTTTAACACCCACGGTCAACAGCTACAAGCTACACATTGCAGCTGTAAAGTCTTTGCTACCTGAAAGACTCTTACAAAGAcctCTTGAGATGCGGCTTTCAAAGGACCCAACAAAAGCTAACATGAATGTCTTGAGAGCTAATCCACCCAGGCCAGATAGCAGGCTGTCCATGTATTACAGACCCTACCATTCCCCGATGCTGGCCTTTGTGAATGAGTTTGTGAGGTCAGAGCGAGTTCTATTGCCACCTCCAGCAACTGCCCACTCTGGAGTAATGGGGGACTTGGGGGCTCAAGCACATAGGGGAAAGGTCCAACGAGCTATTCGCAGTGCTGGGGCCATCTACTCCCACAGCAAAGCTCCTCCCATCCCACAAAATGCAGGTGATGCAGTATTGCTGAATGAAAGGCCATCTCCAGGATTTCCCATCAGTTTCTGCTCCAGAGATGACTGTACAGCCAGCCTTGACAGACTGGATCTGAAATGTCGTGGTCTGATGGAATTTCCACACCTGGATGGAATGAATAAGCTCCGCCTCCTCAACCTGCAGCACAACCTCATATCTGACCTCCCACACCTGGCACACCTGAAGCGGCTTGCATTCCTTGATTTATATGACAACCGCCTGACCGACATGTCAgccatctcctctctctctgcgctCCGGGTGCTCATGCTTGGCAAGAACAGaattcaAAGAATATGCGGCCTGGACAACTTGACCAAACTCGATGTGCTGGACTTGCACAATAACCAGATTAGTAAGATGGAGAACCTGTCTCACCTGTCAGAACTGCGTGTGCTCAACCTGGCAGGTAACTGCATCTGCAGAGTGGAGAATTTGCACGGCTTGGACTCACTGACAGAACTCAACCTCAGATACAACCATATCTCTAGTGTGACGGAGGTGGACCTGCTGTCCTGTCTCCAGCGCCTGTTTCTCAGCTCCAACAGCATCAGCAgttttgatGAGCTGGCCTGTCTGGGACTCTCCTGCTCTCTGTGCGAGCTCACCCTGGATGGGAACCCAGTAGCTCAGGAGTCATGCTACAAACAGGCCGCGCTGCGCTGTGTGCTTCCACTCCGGCTCCTGGACATGAAGCGCATCACCGACGAGGAGAGACGCGCAGTGAGTCTTGTAGCGCGAAAGGAGGATGAGAAGAAGCGCGAGAGCCACAAGCACACTGCTCATAAGgAGAAGCGTCGCTTGGCAATCCGCAATGCAGCACAACAGTGGGAAGGATCCAAGAACTGTCTGGAGCTTCCTGCTCAAAACGGAGCCAAGGAAGATCTCAGCCCTGAGaacagccccgcccactgcccCGCCCAGACCAATGGCATTGCTCAAGAGCCTTCACCTGACGAGCTGAGaaAAGACAAAGGGAGTCCATTCACCCTTTCAGAGCGTCCAGCAGGGGGCAGTGAGAGTAGGTTCCGTTCAACcagccgccccaacagcccccGAGACCCCAgACTTCAGGAGACGGGGGGTCCTAGCGTGCAGAGTCTGTCGCTGTCGGAGAGCCATGTGGCTGAGCTGGATGGGGAGACGGTGCGTCTGTTCGGCCCTGGAGCCTTGGAGGCTCTGGAGAGGGGCTGGGGGGTGCAGACTGCCAGCGCTGTCACCACCATCACCTTCCGCTACATTCAGTTTGATAGCATCGTCCCCACCCTGCCTCGCATCCGCCTCAAATTCCCCAACCTAGTGCATCTGATCTTCATGGAGACTAATATAACACGGCTGCTGCAGTTAGCTGCTTTAGCGCAGGTCCGGCGACTGGAACAGGTCACCATTCACCCAGAGGGGAATCCAGTAGTCAGCCTGACTCTGTGGAGAGCCTTCCTTATCTACAGACTCAACCACCTCAGCCTGCAGAAGATCAATGGAACTGAGGTGACCTTGAATGATGTCATGGCGTCAGAGCGCCTTTTTGGAACTCTGGGTCACGTTGCTTCCACAGAAACTCCACGCTGTCGTTTGTTGCTGCTACTGGAAGAGTCTagGAAGAGGCAGCTGCAGTTCCTGCTGGAGGGGAGGGGTCGCAGGGCTGGTTTGAGCCCTGAGGAGCTGAAGGAAAACGGGAAGCTGCTGGGAGAGAGCATGAGCCGGGCGCTCTTTAACTACCCCAGCAGAGACTGCAGCTCCGAAAGCCCTGAGGAAAGTGGAGGTGAGGTTCTGGAGCGTGGGCTGATGGTGGAGCAGTACCTGAAAGGGTTGGTGCACAGAGCTTCCAGCACCAGTGTAAAGGGGGACGCTCTGCATAAGCTGTGGCCCGCTGTGTTCGTGGAGATGGTGAGGGACTCGGTGGTAGAGATGAGGGACACGCCAGCCTACAGACGGACCTGCCTGAACTCGCTCGCCCACAgcaaatgaaagagagagagagagagagagaaaaccgtAGTGAAGAAGGATGTaggatgaaaaagagagagatcagaAAGTGGGAGGAGAGGAATGAAGGGACGACTCTGCACTTACCCCACCcaggaaaaacaacaacattccCAGCATTCGTTTTTTCATCTCCCTCTCCAGGTTTCACGATTCTCTCTCGTTCCCAAACTCAGAGTCTCCTATGGAGACTTTAATTCGCAATAGATCAAAcgttgatggatggatggatggatggatggatggagaaaaTAAAACCAGTCTACCTGAGAGATATAGAGATTATCTATCACAGAACTCCTCTgcctgagagagatagagagatgcaCCTgactgaatgtgaatgtgaatgtgaaacGATGCCTGTGATGTTTCTTAGTTCAGTCATTCACTTCATCTGTACCAGAGCATTACTCTCAGTAGTAAACCAGGCTGTGCTGTGTTGTTCTGGTCTTCCTAATGGTGCTCCGAACATAGGTCATAGGTCAGTTCTCGGACAAACTTACTAGCATAGGTCAGTCTCTGATCAAAATATCCTACCATAGGTTAGTTCCTGAAAATAAACAGTCAGTCCACATCTCATTCTGCCCACACATAAGACTGGAACAGCCTTTGATTTTGATCTATTCTAGCATCCTCCTGTCTTCTCTCTAAGCCTTACGCCGCTGAATGACATCCAAATGACTTCTACTGTTCTTGCACagtttttgttctgttctgaATTTTACggaatattaaaaaagaatgaTGAACTTTT

Function

symbol description
lrrc49 Predicted to be involved in outer dynein arm assembly. Predicted to be located in microtubule. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 49

GO: NA

KEGG:

id description
K16606 LRRC49; leucine-rich repeat-containing protein 49

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679832.1 True 3507 mRNA 0.50 18 29521777 29598907

Neighbor

gene id symbol gene type direction distance location
tm2d3 tm2d3,LOC108439026 coding upstream 35763 29476685 ~ 29486014 (+)
LOC103023825 tarsl2,LOC108413626 coding upstream 48096 29449150 ~ 29473681 (+)
LOC103039409 NA coding upstream 120196 29398412 ~ 29401581 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding upstream 129811 29371065 ~ 29391966 (+)
csk csk,LOC108264088,LOC106562350 coding upstream 213864 29219466 ~ 29307913 (+)
thsd4 thsd4 coding downstream 7150 29606057 ~ 29715602 (+)
LOC111194806 NA coding downstream 130443 29729350 ~ 29734672 (+)
LOC111194842 NA coding downstream 142154 29741061 ~ 29743027 (+)
LOC107196975 NA coding downstream 276867 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 290986 29889893 ~ 29898429 (+)
G161476 NA non-coding upstream 30957 29483514 ~ 29490820 (+)
G161425 NA non-coding upstream 167486 29333111 ~ 29354291 (+)
LOC111194801 NA non-coding upstream 307042 29210264 ~ 29214735 (+)
G161417 NA non-coding upstream 313487 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 319188 29202353 ~ 29202589 (+)
G161502 NA non-coding downstream 21490 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 26116 29625023 ~ 29646905 (+)
G161508 NA non-coding downstream 57783 29656690 ~ 29657488 (+)
G161511 NA non-coding downstream 124987 29723894 ~ 29724121 (+)
G161532 NA non-coding downstream 214714 29813621 ~ 29816600 (+)
G161331 NA other upstream 404982 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 762770 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 896992 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1725273 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2402513 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 754779 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1255651 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1276131 30875038 ~ 30878327 (+)
efhb NA other downstream 1985839 31584746 ~ 31605490 (+)
G162017 NA other downstream 2469955 32068862 ~ 32148190 (+)

Expression


Co-expression Network