LOC107196975


Basic Information

Item Value
gene id LOC107196975
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29875774 ~ 29884606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679843.1
TATGTCAGACACAAAGTGCTGAAGATCACAACACACATTTTGAGAAGCATTAACCAGACACATCTTGCTAACACACTACAGACAAGAGTGGCTCCTGCTTGTCAGCAGAAGTTTAAAACCAGAATGCAGAAGAAATACCAGATAATTAATGAAGGAATTTCAAAGCAAGGGACCTCGACCCTTCTGAACTTGATCTACACAGAGCTCTTCATCACTGAGGGTGGAAGTGGAGAAGTTAACAGTGAACATGAAGTGAGACAGATTGAGGAAGCACGCTGGAAGACAGCAGCAGAGGACACTCCAATCAAATGCAATGACATTTTTACACCCTCACCAGGACAAGACAAAACCATCAGAACTGTGCTGACAAAAGGCAttgctggaattggaaaaacagtGTCTGTAcagaagttcattctggactggGCTGAAGGAAAAACAAATCAGGAAGTGCACTTTGTATTTCCACTTCCCTTCCGGGAGTTAAATTTGATGAAGGGGAAAATCCTTAGTTTGATGGACCTTCTCTGTCACTTTTTCATTGAAACGAAGGAAATGAAACTAAAGGTATACACGCAATACAGAGTCATgttcatttttgatggtctggatgagtgTCGACTTCCTCTAGACTTCCAGAACAATGAGATCTTGCAGGATGTAACTCAGTCAGCCTCGGTGGATGTGCTGCTAACAAACCTAATTAGGGGGAAacttcttccctctgctctcATCTGGATAACATCTCGACctgcagcagccaatcagatccctCCTGAATGTGTGGATCAGGTTACAGAGGTACGGGGGTTCAATGATCTTCAGAAACAAGAATACTTCAGAAAGAGAATCAGGGATCAGAGCATGGCCGAAAAAATACTCTCACACATGAAGTCTTCAAGAAGCCtctacatcatgtgccacattCCAGTTTTCTGTTGGATTTCAGCCACTGTTTTAGAGAGGATGTTGGGTGAAGCAAAGAGTGGAGAGATTCCAAAGACTCTGACTCAAATGTTCACACATTTTTTGATCTTTCAGACAAAGCACAAGACACAGAAATACAGTGAAAGTAGTGAGCCTGGCTGTGACCAAATCAGAGAGAGTGTTCTAGCCCTGGGAAAACTGGCTTTTCAACAGCTTATGAGTGTGTATTCAGGGATTTGCACCCAAATATTCATAGAGGATTTTACACTGTACCTTGGGAAGGTGTACAGCTTTGTGCACCTGAGTGTTCAGGAACATCTGGCAGCTCTGTATGCATTCGTCTCCTTCGTCAACAACAATGCTTCAGAACAGCAAACCCTCGAAAACCTTGGTTTTCCCAAAAAGACAACAATGTCTGACTTTCTGAAGAGTGCAGTGAAGATGGCTTTGCAGAGTCAGAACGGACATCTTGATCTGTTCCTCCGGTTCCTTCTGGGCCTGTCCTTGGAGTCCAATCAAATTCTCTTACAAGGtctgttcacacagacacaaagtCACAACAATGAAGAAATAATCAAGTACATCATGGAGAAGTTCAAGACAAAACAGAGTTCAGAGAAGATGATCAATCTCTTCCACTGCTTAAATGAATTGAACGAGAATACACTTGTGCAAGAAGTACAGAAATTCTTGAGCAGAAGTCAGAATCATTGCCTCCATGGACTCACAGTCTCTCCTGCTCAGTGGTCAGCTTTGGTGTTTGTAATACTGAGCTCTGAAGACAAGCTAGAAGAGTTTGAGCTGCAGAAATACGAAAGTTCTGAAGAATGTTTGTTGAAGTTATTGCCAGTGGTCAAAGCATCTAAGaaagcattGATGAGCGCGTGTAACCTCACAGAGAAAAGCTGTGGAGCTATGGCCACTGTTCTCAGTTCAGCATCTTCATGTATTCGAGAGCTAGACATGAGCAGCAATAATCTGCAGAattcaggagtgaagcagctCTGTGGAGGACTGGGCAGTCCAAACTGTAAACTAGAGATACTAAGACTGGGTGACTGTAACCTCACAGAGAAAAGCTGTGCAGTTTTTGCCTCAGTTCTCGTATTAGATCACTTAAATCTGAGGGAGTTGCGCCTCAGCAAGAATAAATTACAGGATTCAGGAATAAAACTGCTTTCTGCTGCACTGAAGAGCCCGAAATGTAAACTGGAGACACTAAGGCTGAATAACTGCAGTATAACAGAGGAAGGATGTATTGCCCTGGTTTCAGCTCTGAAATCAAACCCCACACACCTGAAATGTTTGGATATGGGGAGGAATCAACCTGGAGAATCGGGAGTGAAGCTGCTCGCTGATCTTTTGAAGGATAAAGAGTGTAATGTGGAGATACTCAAGCTGTTTGACTGCAGTATTGCAGAGAATGGCTGTGTTTCTCTGCTTTCGGCTTTAAAGTCGAACCCTTCACACCTGAGAGAACTGGATCTGGGCTGGAATAAACCTGGAGAAGCTGGAGTGAAGCTGCTCAGTAATTTTTTGGAGGATTCAAATTGTAAACTTGAGATACTCAAAATCTGTGATTTGAGCCTCAAGTTCAGTTGAGATGACATCTAATAGAAGACACAAATACACCATTTTAGCTATCCATCAATGTGCATTGTTGATGTCTATATTCTGTTTACAATAAAGGAGTTATGGAGGATATGGCAGGAGATTTCTTAAGCTGGCTGGTCTAGGTTGACTACAGAAAATGCATTTTGAAATGTTGATATGTTTTTGGTAGAAGttttgatagttttttttttttactgaaagatTTTGAGACTATGTGTATGGTTGATGGACAGGGTTCTGGAGCCCCAgttgaaaaaaaattgcaatagtATTTTATAGGGATGCACAGGATATTTATCAAGCTACAAGCTTTTTTCTCTGAAAATGGTAAAAGAAACAGGCTCtttataaagataaaataattcataatatagAGTGATTTATTTCAAGTCATATTGCAGTGTATCTTTTAAACAGTGGCGGCAGATGTTAGGTCAGACATTCCATTCCAGACATTCCAAAATGTTCATTTCTGTGCATCACTAGTAGTATAGTACTTAAAGCTCTAAAGGCCTTGAGATCAGATAAGTTCAACAATCCAGGTTTGAATTTTAGGATTTGCTTTGTTGAAATTGAAACGTATCCAGAACATAAGACTGAATctgtaaattacattttattcagcTAGgagatatgatatgatatgatatgatatgagaGGAGATAATTAATTACTAAAAGTAATACCTATACTTCTAAAGCAGAACCAGCCGTTTGTATAACATGTAGGGGTGTcatgatttcgatatttcatcgaaatcaatctaaattatgtcatggtctcgagcctcgaagatCAAAAGAGGATCGacaatccctccctctaagctactcAAATGGCGCAGTGCACTGCAGCTCAAAGAGctgccctttctccagagaatgtggacattctcatctttataaagaaaaacttgaacatataaaaataacagttgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679843.1 True 3481 mRNA 0.41 8 29875774 29884606

Neighbor

gene id symbol gene type direction distance location
LOC111194842 NA coding upstream 132747 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 141102 29729350 ~ 29734672 (+)
thsd4 thsd4 coding upstream 160172 29606057 ~ 29715602 (+)
lrrc49 lrrc49 coding upstream 276867 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 389760 29476685 ~ 29486014 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 5287 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 16710 29901316 ~ 30027748 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 151805 30036411 ~ 30088710 (+)
LOC103035823 bcl2l10 coding downstream 205693 30090299 ~ 30102977 (+)
lysmd2 lysmd2 coding downstream 546841 30431447 ~ 30441876 (+)
LOC111194812 NA non-coding upstream 1462 29870910 ~ 29874312 (+)
G161532 NA non-coding upstream 59174 29813621 ~ 29816600 (+)
G161511 NA non-coding upstream 151653 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 218286 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 228869 29625023 ~ 29646905 (+)
G161599 NA non-coding downstream 80695 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 146317 30030923 ~ 30033401 (+)
G161612 NA non-coding downstream 183410 30068016 ~ 30127142 (+)
G161620 NA non-coding downstream 256109 30140715 ~ 30140944 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 277498 30162104 ~ 30213901 (+)
G161331 NA other upstream 758979 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1116767 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1250989 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2079270 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2756510 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 469080 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 969952 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 990432 30875038 ~ 30878327 (+)
efhb NA other downstream 1700140 31584746 ~ 31605490 (+)
G162017 NA other downstream 2184256 32068862 ~ 32148190 (+)

Expression


Co-expression Network