LOC103042250 (gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297)


Basic Information

Item Value
gene id LOC103042250
gene name gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30036411 ~ 30088710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679845.1
CACACtgacgacacacacacacaacacacactcgctGCGCGCTGACCAATCCCACTCACAAGCAAGAACTGAACAGAACACCTCGCCAAGATGTGTGACCAGACGTTTTTGGCCATCACCTTTGGCCCCTGCGACAACTGCAGCCAGAACAAACCGCTGATGAACATCTACCTGCAGAATGAACCCATCAACTACTGCTCCCTGTGTGTGGAAATGATGGCGTGCCAGGGTCTGTCGAAGGGCGAGACTGTGTCCAGCCTGCGCGCGGAGTCCGAAAACCTGAAGGCCAAGCTGGAGGAGGAGCGATCCAAACTGCACGATGTGGAGCTGCATCAGGTGGCTGAGAAGGTGGAGGCTCTGGGTCAGTTTGTGATGAAGACCCGCAGAACGCTGAAGGGCCACGGTAATAAAGTGCTGTGTATGGACTGGTGTCGGGACAAGAGGAGGATTGTGAGCTCCTCTCAGGACGGGAAGGTCATCGTTTGGGACGCCTACACAACTAATAAGgaGCATGCGGTCACTATGCCGTGTACGTGGGTGATGGCGTGTGCGTACGCTCCGTCTGGCTGTGCCATAGCCTGTGGTGGGCTGGATAATAAGTGCTCGGTGTATCCTCTGTCTCTggataaaaatgagaatttgTCTGCTAAGAAGAAATCCGTGGCGATGCACACCAACTACTTATCATCCTGCAGCTTCACCAACTCTGATATGCAGCTCTTGACCTCCAGTGGTGATGGGACGTgtgcattatgggatgtagagAGCGGTCAGCTGCTGCAGAGTTTCCACGGGCACTCGGCTGATGTGCTGTCTCTGAACCTCGCGCCCTCAGAGACAGGAAACACCTTTGTGTCTGGAGGTTGTGATAAAAAAGCTAACGTGTGGGACATGCGCTCTGGACAGAACATTCAGTCCTTTGAAACTCATGAATCAGACATTAACTGTGTAAGGTACTACCCCAGCGGTGATGCTTTTGCCACGGGTTCTGATGACGCTACTTGTCGCCTGTATGACCTGCGGGCCGATCGGGAGGTGGCCATCTACTCCAAAGAGAGCATCATCTTCGGCGCCTCCAGTGTGGACTTCTCTCTGAGCGGTCGGCTGCTGTTTGCTGGCTATAATGACTACACTATAAACGTGTGGGACGTCCTGAAGGGCACCAGGGTCGCAATTCTGTTTGGGCACGAGAACCGGGTCAGCACAGTCCGAGTGTCGCCCGATGGCACAGCGTTCTGCTCAGGATCGTGGGACAACACTCTGAGGATTTGGGCCTGAGCGCGCCCCCGCTGAGTTTCGGAGCTAATATGACGAAGAATGTGGTGGAGAACACGCAGACCAAATGACCACAGGGCTTTTATTTTTAGATGAGATTTCTGTATAGACTAAGTTTAGCTTAGTTTCTGTCCTCCAGCCCTGAAGCCAGGCCCCTGATCACCAAAGTAACTGTCGTCATGTTTGTTTGCTCAGTACTTTAGACCTGTTATCGCTGTAAAAAATTATGTCATATCATGTCATAATGTCAAAGGTAGAGCTGGGACAACACTCTTGGCTATATAAGGTACGGTATATCAATGTATCAGATCATTTCAGACATTTCAGATCAGTCTATTTATCTTTAATGTGATCGCAATTATAAGTTGTTCAAATCTAGAAGAACTATATCCTCAAGTTAAGTCAACAAAGACCATcagaaatgttatgatgaaactggctctcatcaggaccgccccaggaatgGAAGATCAAGAGTTACTAAAAGTCAAACCACCCACCTGTCTCTATTCTATTGTGGGAGGAAGTGGGTGAACATTTTagtgtagggctgcacgatatatcgtttaagcatcgtcatggcgcagtagtcacatcgcaggacgtgtgatgtcactttaaatcaaacacatcatgttgTAATGTTTGGATTTTGGatacaagaagtagatacacagcgctgtctctgtgtctgtgtgagtgacaggctgctgctgcctaagAAGCACAAAGGGGAGGAGATGTGTGAGGGgagggggcaggagtaaacacgaggtaaccactTGGCCTCCAGCCACATTGTTGTAAGCTTGTAAACTGAGGTGCAAATCTCAAAATCTGTGcgcctcagtccagcacagttttgcacagatttCCAGATACTGCtaaattcacgcttttaattccagaaaaaaaaaacatttaaatgcctgattaaagggccaattactgttgttttgcagtttttctCGGATTTGAGTGCTcggtgctgactcagctcttaatCGGTCCGGATGTGAGACAGCGAGCGGGCGGCGGGATATATATTGGGATATATATATcgtctaaataaaaaagaacatttgcaatgtaaactTTTTCCAATATCCTTGCAGCCCTAATTTAGAATTAGACAGGGATTTGATGTGACagcaattgtgttttttttttttatagaagaaTTAGAAGAAGGTAGACCTGCACACATTCCTAACACAGATCAGCTAAAAAAAGATAATCAGTGACAAGAATAAAAAAGCTCTGGGTAATTAAACCTGTATTTATTAGTAAGACACTGGATTTTAGTTGCATTGTTACTGTAAATCTTGCTTGCTTTTGAATGGTAAGACAGTTAAAACAAGTAAAGAATTTGTCTTGTGgcattttatttctcttttaagTGCAATAGTGTGAATTCACATAGGGCACTTCAGtatctgattcatttatttactttggtcataaaaaaaaaatactgtttagtGTCTCCATTGTGTCTCAATTGATTTCTGTACTGTATTCAGAGGTTATTAAATATCATTTAATGTCTA

Function

symbol description
gnb5b Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and dopamine receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in cardiovascular system; cranial ganglion; neurons; and visual system. Orthologous to human GNB5 (G protein subunit beta 5).
gnb5 Enables G-protein gamma-subunit binding activity and chaperone binding activity. Contributes to GTPase activator activity. Involved in dopamine receptor signaling pathway; negative regulation of voltage-gated calcium channel activity; and positive regulation of GTPase activity. Located in cytosol.

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit beta-5-like

GO: NA

KEGG:

id description
K04539 GNB5; guanine nucleotide-binding protein subunit beta-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679845.1 True 2825 mRNA 0.46 13 30036411 30088710

Neighbor

gene id symbol gene type direction distance location
myo5a myo5a coding upstream 8663 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 137982 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 151805 29875774 ~ 29884606 (+)
LOC111194842 NA coding upstream 293384 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 301739 29729350 ~ 29734672 (+)
LOC103035823 bcl2l10 coding downstream 1589 30090299 ~ 30102977 (+)
lysmd2 lysmd2 coding downstream 342737 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 573172 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 709428 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 882462 30971172 ~ 30983860 (+)
LOC111194809 NA non-coding upstream 3010 30030923 ~ 30033401 (+)
G161599 NA non-coding upstream 3190 29965301 ~ 30033221 (+)
LOC111194812 NA non-coding upstream 162099 29870910 ~ 29874312 (+)
G161532 NA non-coding upstream 219811 29813621 ~ 29816600 (+)
G161511 NA non-coding upstream 312290 29723894 ~ 29724121 (+)
G161620 NA non-coding downstream 52005 30140715 ~ 30140944 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 73394 30162104 ~ 30213901 (+)
G161677 NA non-coding downstream 127792 30216502 ~ 30216804 (+)
G161682 NA non-coding downstream 162872 30251582 ~ 30252005 (+)
G161683 NA non-coding downstream 163392 30252102 ~ 30252497 (+)
G161331 NA other upstream 919616 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1277404 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1411626 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2239907 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2917147 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 264976 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 765848 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 786328 30875038 ~ 30878327 (+)
efhb NA other downstream 1496036 31584746 ~ 31605490 (+)
G162017 NA other downstream 1980152 32068862 ~ 32148190 (+)

Expression


Co-expression Network