LOC111194806


Basic Information

Item Value
gene id LOC111194806
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29729350 ~ 29734672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679849.1
AGATAGGGCCCTGGCATTTATGTTCATGAGGAGTTTGATTTGTGACCACAGCTGTAATGGTGATGTTCACATCTCTGATGTGTtagtaagtgtatgtgtgtgttcaattttttttctgtagcatGAGCGAGTGTAACCTCACAGAGAAAAGCTGTGGAGCTATGGCCACTGTTCTCAGTTCAGCATCTTCATATATTCGAGAGCTAGACATGAGCAGCAATAATCTGCAGAattcaggagtgaagcagctCTGTGGAGGACTGAGCAGTCCAAACTGTAAACTAGAGATACTAAGACTGGGTGACTGTAACCTCACAGAGAAAAGCTGTGCAGTTTTTGCCTCAGTTCTCGTATTAGATCACTTAAATCTGAGGGAGTTGCGCCTCAGCAAGAATAAATTACAGGATTCAGGAATAAAACTGCTTTCTGCTGCACTGAAGAGCCCGAAATGTAAACTGGAGACACTAAGGCTGAATAACTGCAGTATAACAGAGGAAGGATGTATTGCCCTGGTTTCAGCTCTGAAATCAAACCCCTCACACCTGAAATGTTTGGATATGGGGAGGAATCAACCTGGAGAATCGGGAGTGAAGCTGCTCGCTGATCTTTTGAAGGATAAAGAGTGTAATGTGGAGATACTCAAGCTGTTTGACTGCAGTATTGCAGAGAATGGCTGTGTTTCTCTGCTTTCGGCTTTAAAGTCGAACCCTTCACACCTGAGAGAACTGGATCTGGGCTGGAATAAACCTGGAGAAGCTGGAGTGAAGCTGCTCAGTAATTTTTTGGAGGATTCAAATTGTAAACTTGAGATACTCAAGTTGCATGACACCAACATTACAGACGAGGGCTATGTtgctctggcttcagctctCATATCAAACCCCTTACACCTGAGAGAGCTTGATCTGAGCTGTAATGAACCAGGAAAAATAGGAGTGGACCTCCTTTCTTCCTTAGTGGAGGACAAAAACTCTGCATTAAAGAAACTGGAAATCTGTGATTTGAGCCTCAAGTTCAGTTGAGATGACATCTAATAGAAGACACAAATACACCATTTTAGCTATCCATCAATGTGCATTGT
>XM_022679850.1
CAGGGACAGATAGGGCCCTGGCATTTATGTTCATGAGGAGTTTGATTTGTGACCACAGCTGTAATGGTGATGTTCACATCTCTGATGTGTtagtaagtgtatgtgtgtgttcaattttttttctgtagcatGAGCGAGTGTAACCTCACAGAGAAAAGCTGTGGAGCTATGGCCACTGTTCTCAGTTCAGCATCTTCATATATTCGAGAGCTAGACATGAGCAGCAATAATCTGCAGAattcaggagtgaagcagctCTGTGGAGGACTGAGCAGTCCAAACTGTAAACTAGAGATACTAAGACTGGGTGACTGTAACCTCACAGAGAAAAGCTGTGCAGTTTTTGCCTCAGTTCTCGTATTAGATCACTTAAATCTGAGGGAGTTGCGCCTCAGCAAGAATAAATTACAGGATTCAGGAATAAAACTGCTTTCTGCTGCACTGAAGAGCCCGAAATGTAAACTGGAGACACTAAGGCTGAATAACTGCAGTATAACAGAGGAAGGATGTATTGCCCTGGTTTCAGCTCTGAAATCAAACCCCTCACACCTGAAATGTTTGGATATGGGGAGGAATCAACCTGGAGAATCGGGAGTGAAGCTGCTCGCTGATCTTTTGAAGGATAAAGAGTGTAATGTGGAGATACTCAAGCTGTTTGACTGCAGTATTGCAGAGAATGGCTGTGTTTCTCTGCTTTCGGCTTTAAAGTCGAACCCTTCACACCTGAGAGAACTGGATCTGGGCTGGAATAAACCTGGAGAAGCTGGAGTGAAGCTGCTCAGTAATTTTTTGGAGGATTCAAATTGTAAACTTGAGATACTCAAAATCTGTGATTTGAGCCTCAAGTTCAGTTGAGATGACATCTAATAGAAGACACAAATACACCATTTTAGCTATCCATCAATGTGCATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679849.1 True 1081 mRNA 0.43 6 29729357 29734672
XM_022679850.1 False 914 mRNA 0.43 5 29729350 29734672

Neighbor

gene id symbol gene type direction distance location
thsd4 thsd4 coding upstream 13748 29606057 ~ 29715602 (+)
lrrc49 lrrc49 coding upstream 130443 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 243336 29476685 ~ 29486014 (+)
LOC103023825 tarsl2,LOC108413626 coding upstream 255669 29449150 ~ 29473681 (+)
LOC103039409 NA coding upstream 327769 29398412 ~ 29401581 (+)
LOC111194842 NA coding downstream 6389 29741061 ~ 29743027 (+)
LOC107196975 NA coding downstream 141102 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 155221 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 166644 29901316 ~ 30027748 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 301739 30036411 ~ 30088710 (+)
G161511 NA non-coding upstream 5229 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 71862 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 82445 29625023 ~ 29646905 (+)
G161502 NA non-coding upstream 89724 29620397 ~ 29639626 (+)
G161484 NA non-coding upstream 197104 29502120 ~ 29532246 (+)
G161532 NA non-coding downstream 78949 29813621 ~ 29816600 (+)
LOC111194812 NA non-coding downstream 136238 29870910 ~ 29874312 (+)
G161599 NA non-coding downstream 230629 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 296251 30030923 ~ 30033401 (+)
G161612 NA non-coding downstream 333344 30068016 ~ 30127142 (+)
G161331 NA other upstream 612555 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 970343 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1104565 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1932846 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2610086 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 619014 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1119886 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1140366 30875038 ~ 30878327 (+)
efhb NA other downstream 1850074 31584746 ~ 31605490 (+)
G162017 NA other downstream 2334190 32068862 ~ 32148190 (+)

Expression


Co-expression Network