LOC111194807


Basic Information

Item Value
gene id LOC111194807
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30661882 ~ 30672269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679851.1
GAAGAAGAGACAGTGCAATTCAACACAGAGAACAAGCTGGTTCTTCCATACCGCAGAATCCAGAAATATTAGAGAACAGCATCTCCAGCAtccagcagtgtgtaagaaGAAGAACAGCTCCATGATGGAACATTGTACCACAAGTAGTGGAGAAATTGACCCAAAGACTAAAGCACAGGCAGCTGGTCCTCCAAAACCTGACCGTACATCTATGAAGAGTCATTCATCCATGTTGGAGCCTTTTTCTTTTGGCAATGACACTGTGACGTCTCCCCCAAAagagaaggaaaaaattGCTAGCAATCAGGAACTGGACAATATATTCCAGGAGGTGCTGCAGAAGTTTATCTCTCTAGTGACAAAGGAGCTGAAGACATTCGAGAAGCTTCTGAGTCTAGACAACCCGCCATGTTCTGAGAGAGATGTGGAGGATAAGGACAACCCGAAATGGAGGGCTGTGCTGAAGATTACACTGAACATCTTGAGGAATATGAAGCAGACAAATCTTGCTAACACACTAGAGAGCAAATTTGCCCCACCTTGTCAAAGAGAGCTAAAGTCCAAACTAAGGGATAAATGTCAGAATTAATGAAGGAATATCAGGCCATCAAAATGTAGCACTTCTGAATGAGAACTTCACAGAGCTCTACATCACAGAGGGTGGTAGTGGAGAGGTCAATCAAGAACATGAGGTGAAACAGATTGAGACTGCCTCCAGGAACAGGGCAACACAGTCAACACCAATCAAATGCAACGACATCTTCAGATCATTGCAAGAAAAGGACCGAACCATTAAAACTGTCATGACTATAGGGGTTGCTGGAATTGGGAAAACCGTCTCTGTGCAAAAGTTCATACTGGACTGGGCTGAAAAAGGTGTAAACCAGGACATTGCCttcatatttccacttccttttagagaactgaatctgatgaaggagaagaagCTCAGTCTGGTAAAGCTTCTTCAACACTTCTTTCCAGATACACAAGATTTAAAGCCAAAACGTTTTAAGCGCTACAAAATCATGTTTAtctttgatggtctggatgagtgTCGCCTGCCTCTAGACTTCCAGAACAATGAGAACTTGGCGGATATAGAAGAAGAAACCTCAGTGGATGTTCTACTGACGAACCTGATTAAGGGGAaactgcttccctctgctctcaTCTGGATCACCTCTCGACCAGCGGCAGCCTGTCAGATCCCTTCTGAGTTGGTTGATCAGGTGACAGAAGTGCGGGGTTTCAGTGACCCTCAGAAACAAGACTACTTCAGGAGGAGGTTCAGTGATCAGGACCTGGCCAACAGAGTCTTGACTCACATCAAGTCTTCAAGAAGCCtctacatcatgtgccacatacCGGTTTTCTGCTGGATTGcagccactgttctagagagAATGCTGAGTGAAGCTGAGAGTGAAGAAACACTAAAAACCCTGACGCAGATGTTCACATACTTCCTGATCTATCAGATCAAACACAAGAGCCAGAGGTGCAGTCGGAAAGGTGATCCTGATCTTCAAGAAACTAGGAAAAGTATTCTGGCTCTGGGGAAACTGGCTTTCCAGCAGCTTGAAAAAGGAAACCTAATCTTCTAAGAGGAAGACCTCAAAGACAGTGGCATAGATATCAAAGAAGTGTCTGAGTACTGCACCTAGATCTTTAGAGAGGAGCATGAGTTGCACCTGGGGAGAGTCTTCAGCTTTGTACATCTGAGCATTCAGGAGTTCCTTGCTGCTctgtatgcatttttcaacaaaaagGTTCAGAGTCAACAAGTCAGTGAACAGCCAACCAGAAAACTCTCCAAGATTTTCAGCAAAACAACGATGGCTGACTTCCTCAAAAGTGCTGTGGACAGAGCCTTACAGAGTAAGAGTGGACGCCTGGACCTTTTTCTTCGTTTCCTTCTGGGTCTCTCACTGGAGTGTAATCTGACTCTCTTACAAAGCATCCTGAAACCCACAGAAAAGATCTTCTACAACAATGAGGAAACAGTCAGGTACATCAAGGAGAAGATTAAGGAGAACACCTCTCCAGAGAAATCCATCAATCTGTTCCACTGcttgaatgaactgaatgatcaCTCTTTAGTGCAGGAAGTGCAGAGATACATAAACAGAGGTGGCGACCATCGTCTCCGGCATGCCAGGCTCTCTCCTGCTCAGTGGTCAGCTCTGTTGTTTGTGTTGCAGAACTCAGAACAGGAGCTGGATGAGTTTGACCTCAGTAAATATGACCCATCTGAGGAGTGCTTTCTGATGCTGCTGTCAGTAGTCAAAGCATCCAGAAGAGCTGTACTAGCATCATGTCATCTTGGAGTAAAGACATGTGAAGAACTGGCATCTATTTTCAACTTGGAAAACTCCTCACTGAAAGAGCTGGACatcagtaacaatgacctgcaggatttAGGAGTGAAAcagctctctgctggactgaagagttcacactgtaaactgcag
>XM_022679852.1
GAAGAAGAGACAGTGCAATTCAACACAGAGAACAAGCTGGTTCTTCCATACCGCAGAATCCAGAAATATTAGAGAACAGCATCTCCAGCAtccagcagtgtgtaagaaGAAGAACAGCTCCATGATGGAACATTGTACCACAAGTAGTGGAGAAATTGACCCAAAGACTAAAGCACAGGCAGCTGGTCCTCCAAAACCTGACCGTACATCTATGAAGAGTCATTCATCCATGTTGGAGCCTTTTTCTTTTGGCAATGACACTGTGACGTCTCCCCCAAAagagaaggaaaaaattGCTAGCAATCAGGAACTGGACAATATATTCCAGGAGGTGCTGCAGAAGTTTATCTCTCTAGTGACAAAGGAGCTGAAGACATTCGAGAAGCTTCTGAGTCTAGACAACCCGCCATGTTCTGAGAGAGATGTGGAGGATAAGGACAACCCGAAATGGAGGGCTGTGCTGAAGATTACACTGAACATCTTGAGGAATATGAAGCAGACAAATCTTGCTAACACACTAGAGAGCAAATTTGCCCCACCTTGTCAAAGAGAGCTAAAGTCCAAACTAAGGGATAAATGTCAGAATTAATGAAGGAATATCAGGCCATCAAAATGTAGCACTTCTGAATGAGAACTTCACAGAGCTCTACATCACAGAGGGTGGTAGTGGAGAGGTCAATCAAGAACATGAGGTGAAACAGATTGAGACTGCCTCCAGGAACAGGGCAACACAGTCAACACCAATCAAATGCAACGACATCTTCAGATCATTGCAAGAAAAGGACCGAACCATTAAAACTGTCATGACTATAGGGGTTGCTGGAATTGGGAAAACCGTCTCTGTGCAAAAGTTCATACTGGACTGGGCTGAAAAAGGTGTAAACCAGGACATTGCCttcatatttccacttccttttagagaactgaatctgatgaaggagaagaagCTCAGTCTGGTAAAGCTTCTTCAACACTTCTTTCCAGATACACAAGATTTAAAGCCAAAACGTTTTAAGCGCTACAAAATCATGTTTAtctttgatggtctggatgagtgTCGCCTGCCTCTAGACTTCCAGAACAATGAGAACTTGGCGGATATAGAAGAAGAAACCTCAGTGGATGTTCTACTGACGAACCTGATTAAGGGGAaactgcttccctctgctctcaTCTGGATCACCTCTCGACCAGCGGCAGCCTGTCAGATCCCTTCTGAGTTGGTTGATCAGGTGACAGAAGTGCGGGGTTTCAGTGACCCTCAGAAACAAGACTACTTCAGGAGGAGGTTCAGTGATCAGGACCTGGCCAACAGAGTCTTGACTCACATCAAGTCTTCAAGAAGCCtctacatcatgtgccacatacCGGTTTTCTGCTGGATTGcagccactgttctagagagAATGCTGAGTGAAGCTGAGAGTGAAGAAACACTAAAAACCCTGACGCAGATGTTCACATACTTCCTGATCTATCAGATCAAACACAAGAGCCAGAGGTGCAGTCGGAAAGGTGATCCTGATCTTCAAGAAACTAGGAAAAGTATTCTGGCTCTGGGGAAACTGGCTTTCCAGCAGCTTGAAAAAGGAAACCTAATCTTCTAAGAGGAAGACCTCAAAGACAGTGGCATAGATATCAAAGAAGTGTCTGAGTACTGCACCTAGATCTTTAGAGAGGAGCATGAGTTGCACCTGGGGAGAGTCTTCAGCTTTGTACATCTGAGCATTCAGGAGTTCCTTGCTGCTctgtatgcatttttcaacaaaaagGTTCAGAGTCAACAAGTCAGTGAACAGCCAACCAGAAAACTCTCCAAGATTTTCAGCAAAACAACGATGGCTGACTTCCTCAAAAGTGCTGTGGACAGAGCCTTACAGAGTAAGAGTGGACGCCTGGACCTTTTTCTTCGTTTCCTTCTGGGTCTCTCACTGGAGTGTAATCTGACTCTCTTACAAAGCATCCTGAAACCCACAGAAAAGATCTTCTACAACAATGAGGAAACAGTCAGAACTCAGAACAGGAGCTGGATGAGTTTGACCTCAGTAAATATGACCCATCTGAGGAGTGCTTTCTGATGCTGCTGTCAGTAGTCAAAGCATCCAGAAGAGCTGTACTAGCATCATGTCATCTTGGAGTAAAGACATGTGAAGAACTGGCATCTATTTTCAACTTGGAAAACTCCTCACTGAAAGAGCTGGACatcagtaacaatgacctgcaggatttAGGAGTGAAAcagctctctgctggactgaagagttcacactgtaaactgcag
>XM_022679853.1
TTTGGCAATGACACTGTGACGTCTCCCCCAAAagagaaggaaaaaattGCTAGCAATCAGGAACTGGACAATATATTCCAGGAGGTGCTGCAGAAGTTTATCTCTCTAGTGACAAAGGAGCTGAAGACATTCGAGAAGCTTCTGAGTCTAGACAACCCGCCATGTTCTGAGAGAGATGTGGAGGATAAGGACAACCCGAAATGGAGGGCTGTGCTGAAGATTACACTGAACATCTTGAGGAATATGAAGCAGACAAATCTTGCTAACACACTAGAGAGCAAATTTGCCCCACCTTGTCAAAGAGAGCTAAAGTCCAAACTAAGGGATAAATGTCAGAATTAATGAAGGAATATCAGGCCATCAAAATGTAGCACTTCTGAATGAGAACTTCACAGAGCTCTACATCACAGAGGGTGGTAGTGGAGAGGTCAATCAAGAACATGAGGTGAAACAGATTGAGACTGCCTCCAGGAACAGGGCAACACAGTCAACACCAATCAAATGCAACGACATCTTCAGATCATTGCAAGAAAAGGACCGAACCATTAAAACTGTCATGACTATAGGGGTTGCTGGAATTGGGAAAACCGTCTCTGTGCAAAAGTTCATACTGGACTGGGCTGAAAAAGGTGTAAACCAGGACATTGCCttcatatttccacttccttttagagaactgaatctgatgaaggagaagaagCTCAGTCTGGTAAAGCTTCTTCAACACTTCTTTCCAGATACACAAGATTTAAAGCCAAAACGTTTTAAGCGCTACAAAATCATGTTTAtctttgatggtctggatgagtgTCGCCTGCCTCTAGACTTCCAGAACAATGAGAACTTGGCGGATATAGAAGAAGAAACCTCAGTGGATGTTCTACTGACGAACCTGATTAAGGGGAaactgcttccctctgctctcaTCTGGATCACCTCTCGACCAGCGGCAGCCTGTCAGATCCCTTCTGAGTTGGTTGATCAGGTGACAGAAGTGCGGGGTTTCAGTGACCCTCAGAAACAAGACTACTTCAGGAGGAGGTTCAGTGATCAGGACCTGGCCAACAGAGTCTTGACTCACATCAAGTCTTCAAGAAGCCtctacatcatgtgccacatacCGGTTTTCTGCTGGATTGcagccactgttctagagagAATGCTGAGTGAAGCTGAGAGTGAAGAAACACTAAAAACCCTGACGCAGATGTTCACATACTTCCTGATCTATCAGATCAAACACAAGAGCCAGAGGTGCAGTCGGAAAGGTGATCCTGATCTTCAAGAAACTAGGAAAAGTATTCTGGCTCTGGGGAAACTGGCTTTCCAGCAGCTTGAAAAAGGAAACCTAATCTTCTAAGAGGAAGACCTCAAAGACAGTGGCATAGATATCAAAGAAGTGTCTGAGTACTGCACCTAGATCTTTAGAGAGGAGCATGAGTTGCACCTGGGGAGAGTCTTCAGCTTTGTACATCTGAGCATTCAGGAGTTCCTTGCTGCTctgtatgcatttttcaacaaaaagGTTCAGAGTCAACAAGTCAGTGAACAGCCAACCAGAAAACTCTCCAAGATTTTCAGCAAAACAACGATGGCTGACTTCCTCAAAAGTGCTGTGGACAGAGCCTTACAGAGTAAGAGTGGACGCCTGGACCTTTTTCTTCGTTTCCTTCTGGGTCTCTCACTGGAGTGTAATCTGACTCTCTTACAAAGCATCCTGAAACCCACAGAAAAGATCTTCTACAACAATGAGGAAACAGTCAGGTACATCAAGGAGAAGATTAAGGAGAACACCTCTCCAGAGAAATCCATCAATCTGTTCCACTGcttgaatgaactgaatgatcaCTCTTTAGTGCAGGAAGTGCAGAGATACATAAACAGAGGTGGCGACCATCGTCTCCGGCATGCCAGGCTCTCTCCTGCTCAGTGGTCAGCTCTGTTGTTTGTGTTGCAGAACTCAGAACAGGAGCTGGATGAGTTTGACCTCAGTAAATATGACCCATCTGAGGAGTGCTTTCTGATGCTGCTGTCAGTAGTCAAAGCATCCAGAAGAGCTGTACTAGCATCATGTCATCTTGGAGTAAAGACATGTGAAGAACTGGCATCTATTTTCAACTTGGAAAACTCCTCACTGAAAGAGCTGGACatcagtaacaatgacctgcaggatttAGGAGTGAAAcagctctctgctggactgaagagttcacactgtaaactgcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679851.1 True 2474 mRNA 0.45 7 30661882 30672269
XM_022679852.1 False 2281 mRNA 0.44 8 30661882 30672269
XM_022679853.1 False 2227 mRNA 0.45 5 30666563 30672269

Neighbor

gene id symbol gene type direction distance location
lysmd2 lysmd2 coding upstream 220006 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 558905 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 573172 30036411 ~ 30088710 (+)
myo5a myo5a coding upstream 634134 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 763453 29889893 ~ 29898429 (+)
LOC111194808 LOC102215143 coding downstream 125869 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 298903 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 491769 31164038 ~ 31255308 (+)
znf385d znf385d,LOC107688204 coding downstream 708948 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 1015783 31688052 ~ 31802563 (+)
G161746 NA non-coding upstream 1155 30660320 ~ 30660727 (+)
G161745 NA non-coding upstream 24585 30637057 ~ 30637297 (+)
G161697 NA non-coding upstream 326574 30333222 ~ 30335308 (+)
G161696 NA non-coding upstream 336028 30324160 ~ 30325854 (+)
G161695 NA non-coding upstream 339954 30315607 ~ 30321928 (+)
G161755 NA non-coding downstream 17446 30689715 ~ 30689944 (+)
G161754 NA non-coding downstream 23270 30695539 ~ 30696723 (+)
G161763 NA non-coding downstream 87075 30759344 ~ 30796827 (+)
G161775 NA non-coding downstream 173461 30845730 ~ 30846030 (+)
LOC103039351 NA non-coding downstream 218064 30890333 ~ 30915250 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 247670 30353686 ~ 30414212 (+)
G161331 NA other upstream 1545087 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1902875 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 2037097 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2865378 27784896 ~ 27796504 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 182289 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 202769 30875038 ~ 30878327 (+)
efhb NA other downstream 912477 31584746 ~ 31605490 (+)
G162017 NA other downstream 1396593 32068862 ~ 32148190 (+)
G162032 NA other downstream 1564047 32236316 ~ 32295029 (+)

Expression


Co-expression Network