lysmd2 (lysmd2)


Basic Information

Item Value
gene id lysmd2
gene name lysmd2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30431447 ~ 30441876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679856.1
AATCCCAGCTCAGGGGGGCGAGGCTTTTCTGAAAACGGGTGGTTCGAAGCGCCGCTGAGCTCGGTGTTGATGAGGCGGGAGCGGGTCATGGCGGTGATGTGCGGAGGTCGGGCAGCGGGAGGGCTGCGGCTCTGAGGACGGGCTGAGCGCTCCGGGGCtccgcctgtgtgtgtgtgtgagggtgcgATACAGCGGGGGAAGATGGCGGAGTTCTCCCCCGCGCTGCATCTGCGCTCCGGCTCCGACTCTGACAGCGAGCTCTCGCAGAGCCTCGCCCGATTCAAGACGCGCTCGTACGGCAGCACGGCCACGGCCGCCGCGCCGCTCACCGAGAAATACGTGGAGCATCGCGTGGCGGAGGGGGACACCCTGCAGGGCATCGCGCTCAGATACGGGGTCACGATGGAGCAGATCAAAAGGGTCAACAAGCTTTTCAGCAATGACTGCATTTTCCTGCGGCACAGTCTGAACATCCCGGTGCGGACGGAGAGACCTCCCCTGTTTAACGGACTTTCTCTGGAGTCTCCAGACAGCGAAAACACGACGCCTCAGGGCTCTCCCTGCATCAGCCACATGGTGGAGGACGTCCCCCAGGAATCCACGGACCCCCCTTCACCTCCGGACCCAAATACCCGACCCACCCAGCCTGAGGAGCTTTCAGCTAAAGACTACTTACACATGCTGGACTTACAGATCAAACGGTCCAAGCAAGCCGCCAGGAAGCTCAAAGACGAGGATAGCAGGGAAGATGAAGACCCGACgcaaccatcatcatcatcttatCAGGAGATGTAACCCAAATCTAATCACGTTTACGTCCAGCTACGACAATGACGTCCATCTTTCATCCGCTCTCTCCTTGTGtccttcttttatttaaaaccatttttgcaaaatatttgtttgcatttaaCAGGTCATGGATAAGGACTTAACACCTCCACTGCCTTTAAGAagttgcttttattattatgatttattattgctataattattgttgttgttttttttctccattcagttctgtctttttcttcttttttatctctggctttattgaacacatttaaaataaaaattcacccAAAACTATTAGCTTGGCTAAAAAGCTAAAGCTTGCAAGCAAATGTCCAAAGCAAGCAGTTAGCATGCTCCCGCTGTCTTCACTTCagtgttagctatgttagcatTTTTGGTCACATTGTTTCTTCAGGGCACCACATATCAGTGAATCAATCGGTCAATCCGTCCGTCCATCCAGCCAGCCGTTCTGAACGCTTTAAACAAACTGCTGTACAAATCTGAGCTAATCTACCATCAGCACTACCAAGCCAGGTTCCAGAGACCTGGTCTGCAAATGCTAATCACATTGCATTCTGATGATCAGAACTCTCTGCGTAAATATCTGACACATCTACAAGTTTGTGTTCAGTCAGTAAGGCTATATGgaactgcgtgtgtgtgtgcgcgcgcgcgagtgtgtgtgtggctgctgaattttaattttttgggaCTCGCTGTGTGAAAGTGAAGCTTTTGTGTGTGAAGTATGGTTTTGGAGAATTATAATGTAGTGTGCTTTTTGGATTTGAATATCCTAATAAATGTCAGTATTAAGAATG

Function

symbol description
lysmd2 Is expressed in central nervous system; hypophysis; notochord; and pancreas primordium. Orthologous to human LYSMD2 (LysM domain containing 2).

NR:

description
PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 2

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679856.1 True 1622 mRNA 0.50 3 30431447 30441876

Neighbor

gene id symbol gene type direction distance location
LOC103035823 bcl2l10 coding upstream 328470 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 342737 30036411 ~ 30088710 (+)
myo5a myo5a coding upstream 403699 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 533018 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 546841 29875774 ~ 29884606 (+)
LOC111194807 NA coding downstream 220006 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 356262 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 529296 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 722162 31164038 ~ 31255308 (+)
znf385d znf385d,LOC107688204 coding downstream 939341 31381217 ~ 31514641 (+)
G161697 NA non-coding upstream 96139 30333222 ~ 30335308 (+)
G161696 NA non-coding upstream 105593 30324160 ~ 30325854 (+)
G161695 NA non-coding upstream 109519 30315607 ~ 30321928 (+)
G161692 leo1 non-coding upstream 122042 30303750 ~ 30309405 (+)
LOC111194810 NA non-coding upstream 143763 30277327 ~ 30287684 (+)
G161745 NA non-coding downstream 195181 30637057 ~ 30637297 (+)
G161746 NA non-coding downstream 218444 30660320 ~ 30660727 (+)
G161755 NA non-coding downstream 247839 30689715 ~ 30689944 (+)
G161754 NA non-coding downstream 253663 30695539 ~ 30696723 (+)
G161763 NA non-coding downstream 317468 30759344 ~ 30796827 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 17235 30353686 ~ 30414212 (+)
G161331 NA other upstream 1314652 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1672440 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1806662 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2634943 27784896 ~ 27796504 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 412682 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 433162 30875038 ~ 30878327 (+)
efhb NA other downstream 1142870 31584746 ~ 31605490 (+)
G162017 NA other downstream 1626986 32068862 ~ 32148190 (+)
G162032 NA other downstream 1794440 32236316 ~ 32295029 (+)

Expression


Co-expression Network