slc9a1 (slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092)


Basic Information

Item Value
gene id slc9a1
gene name slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31164038 ~ 31255308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679862.1
TTTATAGTGGAATAACAATGATGCAATTCAAGTTGAATGGGCAGTAGATGGCAGTTTTATACGGGGGATGGCACCCCCTTGCACCCACCCTCAGTCCACAGGGAGGGGACTGGAGTTTTGGGCCTAAAGAGATGATGTCCTTTGAATTGCTCCATTCATGGACAGCAAGGTCATTGATTTGAGACACTCCTTACCACGGGATGGCGCTCTGGGGTCGAAATACACTGCATGATACAGCTGTAGGGAGGGGGGCTCCCTCATAGCTTCTGTCCCATACAGTTCCTTCCTCACGCATCCAAATCTTTCCAAAAGGGTGTGTTTTAAAGCTTGTAACTATTTATTCAGCATCACTCTTACTGCAGCATGGACATATAACGCTCCCTGCTGTCTCTGAAGAGCTCCGTGAAGAGCGTTCTAGTCTTGGAAGGACGTGGCCACGCTTAAAACAGAGAACTCgtgcatttctttttattttaaagattaatattagtattattatcgTTTTATTCCCAACTTAAGGTTAAGCGCGCGGGAAGGCGCGAGCTGCTGTTTGTTGCGAGTCGCGCTAAATTCAAAATCCCAGGAACGTTCTGTCAGATTCTCTGCTGCTGGAAAAAAAGCCGTTGGCGTTTTGaaagtttaaaatttaaaaattaaaaaatatgtattattttcttCCGTTATTTCCGTTAATTTACTCGGGCAAACGGTTAAAAATTCAAATCTGACCCTGAATTTGAAGGTTATCAACCGCTGAGTATTCACCGGGGATATTCACCATCCTCTGCAGGCTTCAGAGTGCGCCTCCTCGGCTTGGGGCACGGACACGCTCGCTCTTCTCCTCGGAGGGCTGGAGCTAAACTTCTTAACCTAACTTACCTACCTCagcttctcctttttttttcacagctttattttttaacttaaaataaatttacctcagctttataaaaaaataaaacaacacacgGACCCCGTATTCAGTTGGACTTGAATGGACGTATTATTTGGTaacgttagttagttagctagcctgCATTTATAACGTTTGTAAGTTTTATAGGTATTTATAGCTAGAAAACTAAGTTTCTAGCCAGGTTAGCTTATCTAACTTAGCTGTTTCCACcataacacacactacataGTAACTAACTTACACACcacatgtgttgttttttttgttttccagtcAGCTCTAGAACTAGTTACTTATCTAGCCAAGCCAAGCTAAAGCTAGattagctaagtagctaaccTAAAGTGCTTAaacttagctaactagcttacaTAGTACCTGGCAAGGGCGTgcctttttctttaaattagcCTGGAAGCTAACTAGACtacgctaagctaagctaagctgccTAATTTGCACCGCGTGACgagacaggcaggcaggcaggctggGTGGCTTGGCTGGCTAGGAAGTAGGTAGGGGCAGCAGcggtagcagcagcagctagcaGCTCTAGTAGCTGCTTGGCTTTGTTCCTTTGGGTTCCTTAAGGTTCCTGAAGGTTCTGCTGGGCTCTATTGTGTTCAGTCCATCTGTCCGACCTCCCAGCCGACTGAAGGTGGATCAGAACCGGCTGCTAACCAAAAACAGAGGAcccaaagagaaaaagaagaagaggataatgatgaagatgatggtggtggtggaaaCTGGAGTTACGTTATTAAGGTTGTAAGTCACCTGTATCTTAAGATTAGTTAGTTATAGTTAACccaagtagattttttttaaaccgaGCTCCAGCATGCCGAGTCCTCGCCGTGCTCTCCCCGCTCCCGGAGCCGTGGTGGACCCGCGGAGGTCGGGGTATCTGCTGGTGGTCTCCGTGGTGGTGCTGGGCTGCTGTCTGCTGCCCCTTGGAGCGGCCAGTACCCCGAACAAGACCCCCCAACCGGGAGCCCCGAAGGAGCAGAACGGGAGCCCGGGACACGGAGGGTCTCATGCCAGCAACTACACCAAGAAGCTTTTCCCGGTTCTGTCCTTCGACTACGGACACGTTAAACCCCCGTTCGTGATATTCCTGTGGATCCTGCTGGCTTCCCTAATGAAATTAGGGTTCCACCTCATACCACGTTTGTCCTCCATCGTCCCCGAGAGCTGTCTTCTGATTGTAGTCGGGCTGCTGATGGGGGGAATCTTCAAACTGGTGGGAGAGACCCCACCCATACTGAGGTCTGACCTCTTCTTCCTCTACCTTCTACCGCCCATCATCCTGGACGCTGGCTATTTCTTACCCATAAGGCCCTTCACCGAGAACCTGGGCACTATTCTGATCTTTGCGGTGGTGGGCACTCTGTGGAACTCCTTCTTTATTGGCGGGCTGTTGTACGGCGTGTGCCAGATAGAGGGCACACTGTCCACGGTGGGCCTGCTGCCCTGCTTGCTGTTCGGAGCCATCATATCAGCGGTGGACCCGGTGGCGGTTCTGGCCGTGTTTGAAGAAATTCACATCAATGAGCTGCTTCATATCCTGGTCTTTGGGGAGTCCCTGCTGAACGATGCTGTGACTGTGGTGCTGTATCACCTGTTTGAGGAGTATGCTGGTGCGGGTGCAGTGACTGTCACGGACGTGTTCCTGGGGATCGTGAGTTTTCTGGTGGTGGCGCTTGGCGGTGTGATGGTGGGCGCGATCTATGGCGTGTTGTCAGCATTCACCTCTCGATTTACTGCTCACACTCGCGTCATCGAGCCGCTGTTCGTCTTCGTCTACAGCTACTTGGCTTATCTCTCAGCTGAAGTGTTCCACCTGTCTGGCATCATGGCTTTGATTGCATGCGGTGCCGTCATGCGACCCTACGTGGAGGCCAACATATCGCACAAGTCCCACACCACCATCAAGTACTTCTTGAAGATGTGGAGCAGCGTGAGCGAGACGCTCATCTTCATCTTCCTGGGCGTGTCTACTGTAGCCGGGGACCACAAGTGGAACTGGACCTTCGTTGTCACCACCATCATCCTCTGTATGGTGGCTCGCGTTCTGGGGGTGATAAGTTTGACATACTTGATCAACAAATTCCGCATTGTGAAACTCACCACCAAGGACCAGTTCATCATCGCCTACGGAGGCCTGCGAGGTGCGATCGCCTTCTCGCTGGGATACCTGCTGGACACGGACCACTTCCCCATGAGGAAAATGTTCCTCACAGCCATCATCACGGTCATCTTCTTCACCGTCTTTGTGCAGGGGATGACCATCCGGCCGCTGGTTGACCTGCTGGCTGTTAAGAAGAAACAGGAGACCAAGCGCTCCATTAACGAGGAGATCCACACCCAGTTTTTGGATCACCTGTTGACGGGTATTGAGGACATATGTGGACACTACGGGCATCACCACTGGAAAGACAAgtTGAATCGTTTCAATAAGAAGTATGTGAAGAAGTGCCTGATAGCAGGGGAACGCTCCAAGGAGCCTCAGCTCATCGCTTTCTACCACAAGATGGAGATGAAGCAGGCCATCGAGCTGGTGGAGAGCGGGGGCGGGGTCAAAGTGCCGTCAGCCATGCCCTCCACTGTCTCTATGCAAAATATCCAACCCAAGAAGCCTCCTCCGGAGAGAGCTCTTCCTCAGATATCAAAAGGCCGAGAGGAGGAGATCCGGAAGATTCTGCGCAACAACCTGCAGAAAACACGCCAGAGACTGCAGTCGTACAACAGGCACACACTGGTGGTTGACCCGTACGAGGACGGCTGGAATGAAATTCTGCTGAAGAGGAAGAAGATGATAGAGCTGGAGAAGAAGATATCACAGATGAGTAATTACCTCACAGTGCCGGCGCCACCACCTGATTCTCCCACCATCGCCAGGGCCAGACTGGCATCCGATCCTCAAGCTTGGAGCATCAAGCCGGCAGCGAACGCCGACACCGTACCATCCATCAAAGTGGACCTGGCCTCGCCTCAGTCCCCCGACTCGGTGAGCACGCTGGATGAGTTCAGCaggaggcagcagcagcagcaggaggaggaggaagggggGCTGATGATGAAGCCTCCGTCTGCAGCGAGGGAAGAGCAGGAGGACGGGAAGGAGCAGCAGCGACTCCAGCGCTGCCTGAGTGACCCGGGTCCTGCTGGaactgaggaagaggaggacgaGCCCTTCCTCCCCTGAGGAGACGAGCAGAGGGAGGGAAGAAGGCACTGACTCTTTCTCTGTTTGTATCATCACTGCAGACCTTCTGAACTGATCACATGACTGAGATTTGTCCTGTTTTCATAAAGATAACGGATCGATGAACTTCACAGTAAGCCAAATTGAGAACTCGCGAAACGGAGAGAGAGGAGCGGAGATGACGGAAATAGCCATTTATTTTCTAGCTTTCTCATTCTTCttgtttttaaaactgaaaaaagaaaagcttgGATGAATTCGGGGAATAGGAAAAGAACTATGCATTACCAAAGGTTCGCACTGTTGTTGTTTCCGACTCGTACTGCGcacatctctttatctctccttattttgccttattttttatttagattaagTTAATTTGATGTGTTGAATCGTCAGATGAATTAAATGAAACGCTTTATGTGGCGTAAAATCGTCGCCCACTGAATTTTATATCAGTAAAAAGGCCTTTTTACACTAAGTACGATTTTTTCAGACGGAAAAAAACTACCTTCACACtaaattttttaaacttttttttttttttttgatagctcttattaaaatccactttttctttatctctgctCACTGTTCACTTCTGCTCTTTTTAAGCCAATTTAAAAATTACACTCATGCATAGGCTGTCAATTTCGGACAAAATTAATATACGTTTTCATTTCATACGTTCATATGTTTTCATGTGTATATTTAGATACCAAGATCTTAAAAAATGGCTCGTCCAATTAATTACACTCAAACACAAAACGAACACATTGAAAATGGCAGCCATATTGTTTATTTGCATGGCTAACCGGCTTGATTAGTGcctattttaatacttttatcaCAAAGTGAACGATTCTTTCACTAATCTGAAGCTCACTGTCCACCTCTGCTCTCTTTTAAGCCGGTTAAAGCATTACACATATTCATAGGCTGTCAATTTTAGACGCTAAGCGTAGGACAAAATTAATATGTGTTCGTTTttcaaaatgtaatatatattttttttgtacttaaaaattTCACCTTTGTGCATTTAATGCATTGCATCACTTGAATTGCTTTatgtggtgaaaaaaaaaaacagcacactgCATTATATCATTTAAAAGGCCCATTCCCACCACTTACGACTCTTAGGAACTAggagctctgattggtcaacTGATTTTAATGCATCCGACCACACAAAAGATCATgcaggcttttttttattaatatcttGTTGAATTTAAATTGCTTTATTGGGTTGCTAAACAATCACTGAGTCACTAAAAGTCATTATTTAAGACCATTTCGGTCTTTTtcagctgaaaaaaaagatgctaaTTTTGCAAACGTAGTGGAATCACTTTAAGTTCTTAGTCTTTTGTGCTACAAGAAATCGGGGCTAGAAAAACTCCTCAGCTCTTCTCATTATCAGTGATGAGCTTAGTGGCAAACACTGGAACTGCTTGATGGAGCCTGTGATGCTGGtaaagatgaaaccgaaacttcacgtgaagcgctGCTCTTCAGATGCAAGTGTAGGATATAGATCATATCAAAACGACAGCGTGAACATCTTATAAAACATCTTACATAGGATTTGGTGAGAAAATTgggatttgggccacttttactgctgtgtgaacataaaTAAGGATGATTTTGTCTGTTTAGGAATGCATAAAATATACCATTCATTTACATTCGT

Function

symbol description
slc9a1 Enables calcium-dependent protein binding activity; protein phosphatase 2B binding activity; and sodium:proton antiporter activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; inorganic cation transmembrane transport; and regulation of heart contraction. Located in several cellular components, including membrane raft; nucleoplasm; and plasma membrane. Is integral component of plasma membrane. Part of cation-transporting ATPase complex. Implicated in autosomal recessive spinocerebellar ataxia 19 and congestive heart failure.

NR:

description
PREDICTED: sodium/hydrogen exchanger 1

GO: NA

KEGG:

id description
K05742 SLC9A1, NHE1; solute carrier family 9 (sodium/hydrogen exchanger), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679862.1 True 5835 mRNA 0.46 12 31164038 31255308

Neighbor

gene id symbol gene type direction distance location
LOC103039032 NA coding upstream 180178 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 363814 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 491769 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 722162 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 1061061 30090299 ~ 30102977 (+)
znf385d znf385d,LOC107688204 coding downstream 125909 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 432744 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 1121793 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1426434 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1465936 32721244 ~ 32729851 (+)
G161797 LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482 non-coding upstream 128356 31027988 ~ 31035682 (+)
LOC103039351 NA non-coding upstream 248788 30890333 ~ 30915250 (+)
G161775 NA non-coding upstream 318008 30845730 ~ 30846030 (+)
G161763 NA non-coding upstream 367211 30759344 ~ 30796827 (+)
G161754 NA non-coding upstream 467315 30695539 ~ 30696723 (+)
G161831 NA non-coding downstream 56223 31311531 ~ 31311803 (+)
G161834 NA non-coding downstream 117669 31372977 ~ 31528197 (+)
G161835 NA non-coding downstream 120154 31375462 ~ 31518161 (+)
G161847 NA non-coding downstream 300121 31555429 ~ 31559544 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding downstream 315786 31571094 ~ 31573854 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 269532 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 285711 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 749826 30353686 ~ 30414212 (+)
G161331 NA other upstream 2047243 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2405031 28745696 ~ 28759007 (+)
efhb NA other downstream 329438 31584746 ~ 31605490 (+)
G162017 NA other downstream 813554 32068862 ~ 32148190 (+)
G162032 NA other downstream 981008 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1458875 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4552557 35807865 ~ 35814793 (+)

Expression


Co-expression Network