znf385d (znf385d,LOC107688204)


Basic Information

Item Value
gene id znf385d
gene name znf385d,LOC107688204
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31381217 ~ 31514641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679863.1
caccctcgcAGTCGCGCTGAGATCATGGAGCGGCTGGCAGCGCgtgcaggagcagcagcagcagcagtgtgtgtgtggtagccgGGGATAGGAGTGTGTGATGAGCCATGGAGAGCAGCAGCATGTTCCTGGgtaATGTGTGTCAGAGTGGTTTACTCCCTCTGGTTCGGGCTCCTCTCCCAGTGCAGTCGTCTCTGCGCCTCAAGCAGTTCCTCCCCTTTACGCTGGACACCAGCGCACTCAACCTGGTGCCTGGATTCAGCACTATGGACTCGGTTCAGAAAGCTGTGCTACATCACACAATTGGCATCGCCGCTTCcgctaaaaagaaacatgcTTCCTGCAACGTCTGCCAACTGCGATTTAATTCACAGAGCCAAGCGCTGGCCCACTACAAAGGCACTAAGCATGCCAAGAAGCTCAAATCCCTCGATGCCCCCAAGTGCAAGCAGAAAAGCTTGGCGGTGACCAGGGAGAATGGCAACAAGGAACCCTGCAAAAGCCTCTCGCCCCCTGTGCCACTGCAGAACGGCACTGATGGGAAAGAGTGCAGTCCTGTGCTCCCGGCCCCGGTGCCCCCGCCCTCAGTCCAGTCTGGCTCCAGCACTGGTCCAGCCATGGAGACCCAGTCTACCTCAGCAGCGTCTGCAGCATCGGCGGGGGACGAGGGTCCCTGCTTAACACCTGGAGCCCCCCAGCCCACGGAGCAGGAGGCGGAGTCAGAGTCGGAGGGGGAGAGGGCGGAGCCTGCGGAGACGGAGGCGGAGAAAGCCCTGAGGCTCCTCTACTGCTCCCTCTGCAAGGTGGCCGTCAACTCGCCGTCACAACTGGAGGCGCATAACAGTGGCACCAAACACAAGACCATGCTGGAGGCTCGCAATGGCAACGGCTCCATCAAGTCCTTCCCCAGGGCAGGGGTGAAGAGCAAGCTGCCGACGCCCACCGGCTCCACCACCGGCCTCCAGAACAGGACGTTCCACTGTGAGACGTGCGACGTTCACGTCAACTCCGAGACGCAGCTCAAACAGCATATCAGCAGCCGGCGCCACAAAGACAGAGCAGCAGGAAAACCTGCCAAACCCAAGTACAGCCCCTACACCAAGACCCAAAGAGGACCGACCAAACCACAAACGCAGGTAAAGCTGCCCCTGGGTAAGGAACTGTGCCAGCCACTGACGGCTACGATAGTGCCCTCCCACCTGGCAGCCGTCGCCGCGGCAGCCGCCGCGGTAAGCCCCGCCTTCCCTCTGCGTGCCGGCCAAAGCGCCTCCATCTTTCAGACTCAGTCCCTCCCCGCAGCCCTCCTCCGCCCCGCCCCCGGGCCTATTCGGACCGCCCACGCTCCGGTACTGTTCGCTCCCTACTGACCTCTGACCTGTGACCTCTGATACAGTACGTCTGATGCACCGTCTCAGCCTCCGCGGTAACGTGGTCCAGTCGTAACGTGGATCATTGCCTATCTGTCCATCCCGACCACTCGAGCGTCACACCGGGGTCGCACCAGAGACCGAACACCAGAGACGTGCGACGCTATACCGCAATAATTATAAGAGACAAACCAGGTAACTATGCAGCATTGTCATCGCCATGTGACACACTGActctataaatgtatttagggatatattatattgttttttctgtcgttttttgttttttggtttgggTATCGTGTCTCGTTTCTCGTTGCTTCTGAgaaaaagatttttattttttcgtcTGTACGTAAAGAGAAAGAGGCTGAAAGTTGGTTCTACTGCTCTGCTGTTTGCACTTTAAAGCCTCCTTCTCCTTCTGTGGATGTCTTCAGTGCTTTAGGTGGCTAGAACGCATCTCATTCCTCCCTGTATGTGTGTACGGTcttataggttttatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtgttgacgTGGTGTGAATGGGAAATGGGAAAATAAGAAAGTAAGGCAAGTGGCTTTTCCTCCAAAGTGAAATACTGCTGATTTATTTCCAAGAAAAAAGGACAGAAGTACAGCGGGTACGTGCTACGCAAA
>XM_022679864.1
caccctcgcAGTCGCGCTGAGATCATGGAGCGGCTGGCAGCGCgtgcaggagcagcagcagcagcagtgtgtgtgtggtagccgGGGATAGGAGTGTGTGATGAGCCATGGAGAGCAGCAGCATGTTCCTGGgtaATGTGTGTCAGAGTGGTTTACTCCCTCTGGTTCGGGCTCCTCTCCCAGTGCAGTCGTCTCTGCGCCTCAAGCAGTTCCTCCCCTTTACGCTGGACACCAGCGCACTCAACCTGGTGCCTGGATTCAGCACTATGGACTCGGTTCAGAAAGCTGTGCTACATCACACAATTGGCATCGCCGCTTCcgctaaaaagaaacatgcTTCCTGCAACGTCTGCCAACTGCGATTTAATTCACAGAGCCAAGCGCTGGCCCACTACAAAGGCACTAAGCATGCCAAGAAGCTCAAATCCCTCGATGCCCCCAAGTGCAAGCAGAAAAGCTTGGCGGTGACCAGGGAGAATGGCAACAAGGAACCCTGCAAAAGCCTCTCGCCCCCTGTGCCACTGCAGAACGGCACTGATGGGAAAGAGTGCAGTCCTGTGCTCCCGGCCCCGGTGCCCCCGCCCTCAGTCCAGTCTGGCTCCAGCACTGGTCCAGCCATGGAGACCCAGTCTACCTCAGCAGCGTCTGCAGCATCGGCGGGGGACGAGGGTCCCTGCTTAACACCTGGAGCCCCCCAGCCCACGGAGCAGGAGGCGGAGTCAGAGTCGGAGGGGGAGAGGGCGGAGCCTGCGGAGACGGAGGCGGAGAAAGCCCTGAGGCTCCTCTACTGCTCCCTCTGCAAGGTGGCCGTCAACTCGCCGTCACAACTGGAGGCGCATAACAGTGGCACCAAACACAAGACCATGCTGGAGGCTCGCAATGGCAACGGCTCCATCAAGTCCTTCCCCAGGGCAGGGGTGAAGAGCAAGCTGCCGACGCCCACCGGCTCCACCACCGGCCTCCAGAACAGGACGTTCCACTGTGAGACGTGCGACGTTCACGTCAACTCCGAGACGCAGCTCAAACAGCATATCAGCAGCCGGCGCCACAAAGACAGAGCAGCAGGAAAACCTGCCAAACCCAAGTACAGCCCCTACACCAAGACCCAAAGAGGACCGACCAAACCACAAACGGTAAAGCTGCCCCTGGGTAAGGAACTGTGCCAGCCACTGACGGCTACGATAGTGCCCTCCCACCTGGCAGCCGTCGCCGCGGCAGCCGCCGCGGTAAGCCCCGCCTTCCCTCTGCGTGCCGGCCAAAGCGCCTCCATCTTTCAGACTCAGTCCCTCCCCGCAGCCCTCCTCCGCCCCGCCCCCGGGCCTATTCGGACCGCCCACGCTCCGGTACTGTTCGCTCCCTACTGACCTCTGACCTGTGACCTCTGATACAGTACGTCTGATGCACCGTCTCAGCCTCCGCGGTAACGTGGTCCAGTCGTAACGTGGATCATTGCCTATCTGTCCATCCCGACCACTCGAGCGTCACACCGGGGTCGCACCAGAGACCGAACACCAGAGACGTGCGACGCTATACCGCAATAATTATAAGAGACAAACCAGGTAACTATGCAGCATTGTCATCGCCATGTGACACACTGActctataaatgtatttagggatatattatattgttttttctgtcgttttttgttttttggtttgggTATCGTGTCTCGTTTCTCGTTGCTTCTGAgaaaaagatttttattttttcgtcTGTACGTAAAGAGAAAGAGGCTGAAAGTTGGTTCTACTGCTCTGCTGTTTGCACTTTAAAGCCTCCTTCTCCTTCTGTGGATGTCTTCAGTGCTTTAGGTGGCTAGAACGCATCTCATTCCTCCCTGTATGTGTGTACGGTcttataggttttatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtgttgacgTGGTGTGAATGGGAAATGGGAAAATAAGAAAGTAAGGCAAGTGGCTTTTCCTCCAAAGTGAAATACTGCTGATTTATTTCCAAGAAAAAAGGACAGAAGTACAGCGGGTACGTGCTACGCAAA
>XM_022679865.1
caccctcgcAGTCGCGCTGAGATCATGGAGCGGCTGGCAGCGCgtgcaggagcagcagcagcagcagtgtgtgtgtggtagccgGGGATAGGAGTGTGTGATGAGCCATGGAGAGCAGCAGCATGTTCCTGGgtaATGTGTGTCAGAGTGGTTTACTCCCTCTGGTTCGGGCTCCTCTCCCAGTGCAGTCGTCTCTGCGCCTCAAGCAGTTCCTCCCCTTTACGCTGGACACCAGCGCACTCAACCTGGTGCCTGGATTCAGCACTAGCCAAGCGCTGGCCCACTACAAAGGCACTAAGCATGCCAAGAAGCTCAAATCCCTCGATGCCCCCAAGTGCAAGCAGAAAAGCTTGGCGGTGACCAGGGAGAATGGCAACAAGGAACCCTGCAAAAGCCTCTCGCCCCCTGTGCCACTGCAGAACGGCACTGATGGGAAAGAGTGCAGTCCTGTGCTCCCGGCCCCGGTGCCCCCGCCCTCAGTCCAGTCTGGCTCCAGCACTGGTCCAGCCATGGAGACCCAGTCTACCTCAGCAGCGTCTGCAGCATCGGCGGGGGACGAGGGTCCCTGCTTAACACCTGGAGCCCCCCAGCCCACGGAGCAGGAGGCGGAGTCAGAGTCGGAGGGGGAGAGGGCGGAGCCTGCGGAGACGGAGGCGGAGAAAGCCCTGAGGCTCCTCTACTGCTCCCTCTGCAAGGTGGCCGTCAACTCGCCGTCACAACTGGAGGCGCATAACAGTGGCACCAAACACAAGACCATGCTGGAGGCTCGCAATGGCAACGGCTCCATCAAGTCCTTCCCCAGGGCAGGGGTGAAGAGCAAGCTGCCGACGCCCACCGGCTCCACCACCGGCCTCCAGAACAGGACGTTCCACTGTGAGACGTGCGACGTTCACGTCAACTCCGAGACGCAGCTCAAACAGCATATCAGCAGCCGGCGCCACAAAGACAGAGCAGCAGGAAAACCTGCCAAACCCAAGTACAGCCCCTACACCAAGACCCAAAGAGGACCGACCAAACCACAAACGCAGGTAAAGCTGCCCCTGGGTAAGGAACTGTGCCAGCCACTGACGGCTACGATAGTGCCCTCCCACCTGGCAGCCGTCGCCGCGGCAGCCGCCGCGGTAAGCCCCGCCTTCCCTCTGCGTGCCGGCCAAAGCGCCTCCATCTTTCAGACTCAGTCCCTCCCCGCAGCCCTCCTCCGCCCCGCCCCCGGGCCTATTCGGACCGCCCACGCTCCGGTACTGTTCGCTCCCTACTGACCTCTGACCTGTGACCTCTGATACAGTACGTCTGATGCACCGTCTCAGCCTCCGCGGTAACGTGGTCCAGTCGTAACGTGGATCATTGCCTATCTGTCCATCCCGACCACTCGAGCGTCACACCGGGGTCGCACCAGAGACCGAACACCAGAGACGTGCGACGCTATACCGCAATAATTATAAGAGACAAACCAGGTAACTATGCAGCATTGTCATCGCCATGTGACACACTGActctataaatgtatttagggatatattatattgttttttctgtcgttttttgttttttggtttgggTATCGTGTCTCGTTTCTCGTTGCTTCTGAgaaaaagatttttattttttcgtcTGTACGTAAAGAGAAAGAGGCTGAAAGTTGGTTCTACTGCTCTGCTGTTTGCACTTTAAAGCCTCCTTCTCCTTCTGTGGATGTCTTCAGTGCTTTAGGTGGCTAGAACGCATCTCATTCCTCCCTGTATGTGTGTACGGTcttataggttttatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtgttgacgTGGTGTGAATGGGAAATGGGAAAATAAGAAAGTAAGGCAAGTGGCTTTTCCTCCAAAGTGAAATACTGCTGATTTATTTCCAAGAAAAAAGGACAGAAGTACAGCGGGTACGTGCTACGCAAA

Function

symbol description
znf385d Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ZNF385D (zinc finger protein 385D).

NR:

description
PREDICTED: zinc finger protein 385D

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679863.1 True 2045 mRNA 0.56 8 31381217 31514641
XM_022679864.1 False 2042 mRNA 0.56 8 31381217 31514641
XM_022679865.1 False 1937 mRNA 0.56 7 31381217 31514641

Neighbor

gene id symbol gene type direction distance location
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 125909 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 397357 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 580993 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 708948 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 939341 30431447 ~ 30441876 (+)
satb1 satb1,LOC107569796 coding downstream 173411 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 862460 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1167101 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1206603 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 1267433 32782074 ~ 32879256 (+)
G161831 NA non-coding upstream 69414 31311531 ~ 31311803 (+)
G161826 NA non-coding upstream 134340 31246081 ~ 31246877 (+)
G161818 NA non-coding upstream 161034 31219338 ~ 31220183 (+)
G161816 NA non-coding upstream 181470 31192281 ~ 31199747 (+)
G161808 NA non-coding upstream 190968 31099568 ~ 31190249 (+)
G161847 NA non-coding downstream 40788 31555429 ~ 31559544 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding downstream 56453 31571094 ~ 31573854 (+)
G162001 NA non-coding downstream 321585 31836226 ~ 31836672 (+)
G162003 NA non-coding downstream 357382 31872023 ~ 31872277 (+)
G162014 NA non-coding downstream 573702 32088343 ~ 32091024 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 486711 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 502890 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 967005 30353686 ~ 30414212 (+)
G161331 NA other upstream 2264422 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2622210 28745696 ~ 28759007 (+)
efhb NA other downstream 70105 31584746 ~ 31605490 (+)
G162017 NA other downstream 554221 32068862 ~ 32148190 (+)
G162032 NA other downstream 721675 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1199542 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4293224 35807865 ~ 35814793 (+)

Expression


Co-expression Network