LOC107196951



Basic Information


Item Value
gene id LOC107196951
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32377101 ~ 32565890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022679876.1
gagagagagagagagagagaggtgtagaTGTGTTGGAGGATGTGGTTTTCCTGAGCTTGCAGAACGCACCGCTGCGCGCGCGCATACTTTGAGCATGAGCTAAACGCGAGCGCGCGCGCAGAGAAAAGTGCGTCCACGCTTCTGGTTCTTGCTGTTTGCCTCGCGCGAGACGCTCTGACCGGGAGTTTAGAGAGAAGAGCACGAGGAGCCTGGCTGACCGTCTTCTGCATCTGCTTCATCTTCCTCAGCGCGCGCTCCACACAGCACAGCTGCGGGAAACCTGCTGCCTCCGCGCTCGCTCGCGCCCTTCATGCGCTGATCCGCGAGCACTGAGAACTTCCAGCACCTGAGGGTCCACAGCCCCCCAACAGTTGAGGATCAGAGCAAAGTTGGACAGTAACGATGGGTTGTGGGCTGAGGAAGATCCGTCAGACAGACGACAACAGTCCGGGGAAGATATACTCCACCCTCAAGAGGCCGCAGGTGGAGACTAAGATTGGCGTGGCCTACACATACTGCCACCTGGACTTTCTGATTGGAAGAGAAGATGGGACATCTACTCTGTGTCTGTCCTCGGTGCGGGAGCTGCCTTCCCAGCTGCAGGATCTTTACCAGCAGGGATTCGTCCTCACAGCTGTCCACCCGTTTGTCCATCCGTGTGGTCCAGAGCCTGCAAGTGTCCAGCGGCAGCTTTACCGAGCCGTCCTCACCAAACTGCCTGAAAGCTCTGAGAGGAGTCCGTCAGACTTCGAGCCCTATCACCTGAAGCTGGAGGAGTGTCTCAGCGCCGACCACGTCCCCACCCCGGAGCACATCCAGGGCTACGTCAAGAAACAGATCCAGGACGCAGCAGATCAGGGCATTGTGTTCGCTGGCTTCATCCAAGAGCCCGCCGGCCTGCACCCCCACACGGCAGGACGAGCAGATGGAGGCGAGCCATCGCTGTCTCTACACTCCAGCCCCAGCTCGCTCCGCGGCTCCGAGCTCACGGCCAGTCCCAGCCACCAGGGCGACCCCGACCAGATAGCTGAGAGCGGGCCGGAGGACTGGGGCAGCCACACGGAGTCCGAGGCAGTGAAAGCATCGAGAGAAGCAGGTGGAGACGCCCTATCAGACGGCACCTCCATCGCATTAACACCGGAGCCTTCAGAGGGTCTGGAAGATACGCCGGTGCACAACAACAACAAGGCCAAAGACGCTGAAAAACTCGGCAGACCATCCGTCGCCAGGAGTGGCGCTGAGCTTTTCGGGCTGTTTAACTACCCCGGCGGGCAGCGGAACCCACTGAAGTATTACACGGTGAAGGTGCCCCTGAGGGTCCAGCCGAGGGAGGGGGGAGTCCGTGCCGTCGAGGCCAACTGGCTGGATCACATGACTCAGCACTTTAACAGTGGGGCATCGCTGGTGGACGGGTACTTCCATCTGGGAAACGACAATGATCAGCTGCCGAAGGTCACGGACAGCGTCTTCGTCTTCCAGGAAGGCGACTCCAACGCCAACACGACCTACGACGCCATCGTGGTGGAACAGTGGACCGTCCTTGACGGTGTACAGGTGAAGACGGACTACATCCCTCTCCTGCAGTCTCTGGCTTCATTCGGATGGAGGCTGACCTGTGTATTGCCCACACCAATCGTCAAAACCAACAGTGATGGAAGCCTGTCTACAAAGCAGATCGTGTTCCTCCAGAGACCAGCACTGCCTCTCAAGAGGAAACAGTCAAAGAAACTCATCTTCAGAACGCGGAACAAGGCGACCAAGAACTCCATCAAAGACGCGCcgaaaaacaagaagaagaaaagcgCAGCTGCCGAGAGAGAGCTGGATGAGGCGCCGAAGGTCCGGGACAGGGTGGAGAAGGATGCGGCTGAAGAGGATAATAATAAGGACACGAAGAAGAACAAAGGGAAAAATGAgggaagaaacagagagaaggagacGGTAGAGGTTGAGGAGGAGAAGAGTGAGAAATGGGTAGAGAATGACAGGGAGGTCAGGAGAGAGGTAGGGAATGAAATGGATAGAGAAGAACGAGACGTAGAGGAAAAGCAAGAAGGGTTAGAGGTCAGGAAAGTGCAAGATTCGACTACTGAGGTTAAAAACGAAGAAACCAATGATCTGAATGCAGAGGCGGAGGTAGAAACAAGACATACTGACTCAACTGGACTGGATAGAACAGAGCAGGAAAACCACCAACAGCACACGACGCCAATCCCAATCGAGGAATCCGAACATCTGGCCGATTCTGGTAATTTGGAATAATCGCACCATTTGCCTTGCCTCTGCTTGCAAGGGGCAGGGGCTTTGTGGACATTTCATTCAGTACACTCAGTGTACGAACAGGGAGAAATCTTAAAAAAGCCCAACGCCTGTTCCAGTGACCTCTGAAAGCCCACTCTGACCATAGCAGTGGGGTAAAAACAGACGTTCCCCACCTGCCCTTGCCTAAGCGTTCAGCTAAGACCAGAGATTATTACCTGTAAAAGCACTGGATATGAAAATTACATGgatgtatctatatatatacataagccCAAAGAGGCCCAGGGCTGACGAAATATACTGACTCTTGAGCTGTCCATTATCCTGAACCTTACCTCAGTTGAAAATAGCCTATGCTGTGTAAGCAGTGGGCGCATCCAGTGTGCTTAAATAAGACTAGGAGGAGTAGGTGGCTTGTCGTTGCGAAAGGCAATCTGCAATCTGTTGTAAAGAAGTAAAGAAGATATCGTTGTGTCCTTCTGTTTACATTTATGAATATGTTCAGTCACGCTCCCAGCAAGCATAAAGTATTAAGTGCGCACTGAGAAGAATTACATTGGAATCGCATCGCAAATATGTGTTTCGCATTCGAGCTGTCAGCTTTCGGGGCACGTTCTCAAGCCACAGCCGGGGAGAAATCCAGAGACAATCTGTGCTGACTCTGCAGCAGACTGTTTgttttgactatttttttattttatttctcactcGCCGAGGTAATGAATGTCAAAATCCCAAAAGTCCACGAGTCCTTCGGTCCACAGAAACCAAAAAAAGAAGCCTGAAAAAGTTGGAACATGACTTGAGAACACGGCAGAAAAATGAGAGCCTAATCCTGTCCGCCAGAAAACAAGTGTAACCCTGCCGGCAGCAGAACATCCAGAGCTGAATCCATTTGCACgacatctctaaaaaaaaaaaacaaatgggtCTGACCTTTCTTGACCTGGCCTGGGTCCAGGGATTCATTAGGCGATGAGGATACAGCTGAATGGCATGACCTCTCATTCGTTTGTAATTAGCAATGGGAGACCATCTCAAATTCATAATTCATTTCATGGGCTGATGGTGGAATGAGATTTCCTGTACCCgttaaatgtttggacacacagaaatatatatttgatctCATTAAAAGGAACTCTGATGTGGTTGCTCTGTAAGAGCAGTTCGTTGTTAGAGTAAAGCCCAAACTAGACACCACCATTCTACACAGTCTTTTCTGGCTTGTTCCTGTTCAAAAGTACCAAACTTACTagtataaacacattttaagacaaaaataaatattgaagtCGATGCTCATATATTAATTTGGTACAAAAATTTTAAAGAATGTCACCAAAAAGACTGAAAAAGTGATTTTGATAACATTTTCTATGAATATCATGTCTATTagagattaaaaataaataacttataacacattataatgcatataATTCATAAGGTGCTATTAAAATGGCTCTAAATATGTatagaaattaaatataaaataaattaaaaagaaacacattataGAGATGCTTAGTATGCATTAGAcattttaatcataataattatcAGTGTTTATGGGATGTTATATGTTTATACCAAGCACCTCAACAAAGGAAAAACTGCCTTAACAAACCATAATATAATTACTTTTAACTACTCATAAATTatacttaatttaaatattataaatgcttatattaatgtataatgtattataaagtaAAGTGACCGAAGACCATCattcatatatattaatagatatatgaTAAATTAATCCAGATGTGTAAcagcttatgatgcattataatcatTGTACATtagtattatacatttttattaatatgtataacCATATGCATAATGCctcataaatgcattataatgtgttatgaatatgtttatggAGTCTAATAGACAAGCCATTCATATAAATGAAGTGTTACCTTGAATTCTTATGGCTCTTCATGAAGCTACAAGAGCAAAAAAAGTAGCAAGGTGTGAATCTTCATGAAGGTCAATACAGGCTACAttgaaaaatctgaaattttAGAATCTAAATGATTCATTtaacatctttttttaatcatttcaaaTCTATTGAATTCTTCTTACTCAACGTCTTCACTCCTGTGGTGAATAAATCTCTGAATTATTGAACATTAATGGGTGTTTCCAGACATTTAACTGGTACAAGGTGATTAAACATCCAAGCAATGCATCTGACTCAAAGTTAGCATTTCAATAAGCGCTGCATTAGAAGAGCCCTGGGGTGGTTTAAGGTAGCGCTGTGGTCTTTTCCAGAAGGCTCCCCCCAGCAGCTGTAGGGATTATGATCAAAGACGACCGAGCTAAGAGATATTTAACGTTCACATGATGCTGACTGTACCTTACGGGCTGGCTTCCCGGACAAAGATTAAGCCCCAGAATCAAAAGGATTTTCCACGGAGAATCACCAGTGACGCTGTCGATTAggccaagactaggcttaatccgtGTCCAGGAAACAGGCCAAGAAGCTAATGTATTATCTGTGAGTTATTTAGCAGGGCGGAAGGAACAAAATAACAGATAAAAAGTGTACAGCCCAGAAGATGGGGCTGTTTCCCGCAGCAATTAATCCCACCCATTATTTCCTAGTGTCCAACTTACTTCTTATGTATGTGTGGTCTGATTGATCTATAAGTGAAGGCTAAAAGATCTATTAGACCTCTAAtaactagggatgcaccaaatggAAAGCTTTGgct
>XM_022679877.1
gagagagagagagagagagaggtgtagaTGTGTTGGAGGATGTGGTTTTCCTGAGCTTGCAGAACGCACCGCTGCGCGCGCGCATACTTTGAGCATGAGCTAAACGCGAGCGCGCGCGCAGAGAAAAGTGCGTCCACGCTTCTGGTTCTTGCTGTTTGCCTCGCGCGAGACGCTCTGACCGGGAGTTTAGAGAGAAGAGCACGAGGAGCCTGGCTGACCGTCTTCTGCATCTGCTTCATCTTCCTCAGCGCGCGCTCCACACAGCACAGCTGCGGGAAACCTGCTGCCTCCGCGCTCGCTCGCGCCCTTCATGCGCTGATCCGCGAGCACTGAGAACTTCCAGCACCTGAGGGTCCACAGCCCCCCAACAGTTGAGGATCAGAGCAAAGTTGGACAGTAACGATGGGTTGTGGGCTGAGGAAGATCCGTCAGACAGACGACAACAGTCCGGGGAAGATATACTCCACCCTCAAGAGGCCGCAGGTGGAGACTAAGATTGGCGTGGCCTACACATACTGCCACCTGGACTTTCTGATTGGAAGAGAAGATGGGACATCTACTCTGTGTCTGTCCTCGGTGCGGGAGCTGCCTTCCCAGCTGCAGGATCTTTACCAGCAGGGATTCGTCCTCACAGCTGTCCACCCGTTTGTCCATCCGTGTGGTCCAGAGCCTGCAAGTGTCCAGCGGCAGCTTTACCGAGCCGTCCTCACCAAACTGCCTGAAAGCTCTGAGAGGAGTCCGTCAGACTTCGAGCCCTATCACCTGAAGCTGGAGGAGTGTCTCAGCGCCGACCACGTCCCCACCCCGGAGCACATCCAGGGCTACGTCAAGAAAATCCAGGACGCAGCAGATCAGGGCATTGTGTTCGCTGGCTTCATCCAAGAGCCCGCCGGCCTGCACCCCCACACGGCAGGACGAGCAGATGGAGGCGAGCCATCGCTGTCTCTACACTCCAGCCCCAGCTCGCTCCGCGGCTCCGAGCTCACGGCCAGTCCCAGCCACCAGGGCGACCCCGACCAGATAGCTGAGAGCGGGCCGGAGGACTGGGGCAGCCACACGGAGTCCGAGGCAGTGAAAGCATCGAGAGAAGCAGGTGGAGACGCCCTATCAGACGGCACCTCCATCGCATTAACACCGGAGCCTTCAGAGGGTCTGGAAGATACGCCGGTGCACAACAACAACAAGGCCAAAGACGCTGAAAAACTCGGCAGACCATCCGTCGCCAGGAGTGGCGCTGAGCTTTTCGGGCTGTTTAACTACCCCGGCGGGCAGCGGAACCCACTGAAGTATTACACGGTGAAGGTGCCCCTGAGGGTCCAGCCGAGGGAGGGGGGAGTCCGTGCCGTCGAGGCCAACTGGCTGGATCACATGACTCAGCACTTTAACAGTGGGGCATCGCTGGTGGACGGGTACTTCCATCTGGGAAACGACAATGATCAGCTGCCGAAGGTCACGGACAGCGTCTTCGTCTTCCAGGAAGGCGACTCCAACGCCAACACGACCTACGACGCCATCGTGGTGGAACAGTGGACCGTCCTTGACGGTGTACAGGTGAAGACGGACTACATCCCTCTCCTGCAGTCTCTGGCTTCATTCGGATGGAGGCTGACCTGTGTATTGCCCACACCAATCGTCAAAACCAACAGTGATGGAAGCCTGTCTACAAAGCAGATCGTGTTCCTCCAGAGACCAGCACTGCCTCTCAAGAGGAAACAGTCAAAGAAACTCATCTTCAGAACGCGGAACAAGGCGACCAAGAACTCCATCAAAGACGCGCcgaaaaacaagaagaagaaaagcgCAGCTGCCGAGAGAGAGCTGGATGAGGCGCCGAAGGTCCGGGACAGGGTGGAGAAGGATGCGGCTGAAGAGGATAATAATAAGGACACGAAGAAGAACAAAGGGAAAAATGAgggaagaaacagagagaaggagacGGTAGAGGTTGAGGAGGAGAAGAGTGAGAAATGGGTAGAGAATGACAGGGAGGTCAGGAGAGAGGTAGGGAATGAAATGGATAGAGAAGAACGAGACGTAGAGGAAAAGCAAGAAGGGTTAGAGGTCAGGAAAGTGCAAGATTCGACTACTGAGGTTAAAAACGAAGAAACCAATGATCTGAATGCAGAGGCGGAGGTAGAAACAAGACATACTGACTCAACTGGACTGGATAGAACAGAGCAGGAAAACCACCAACAGCACACGACGCCAATCCCAATCGAGGAATCCGAACATCTGGCCGATTCTGGTAATTTGGAATAATCGCACCATTTGCCTTGCCTCTGCTTGCAAGGGGCAGGGGCTTTGTGGACATTTCATTCAGTACACTCAGTGTACGAACAGGGAGAAATCTTAAAAAAGCCCAACGCCTGTTCCAGTGACCTCTGAAAGCCCACTCTGACCATAGCAGTGGGGTAAAAACAGACGTTCCCCACCTGCCCTTGCCTAAGCGTTCAGCTAAGACCAGAGATTATTACCTGTAAAAGCACTGGATATGAAAATTACATGgatgtatctatatatatacataagccCAAAGAGGCCCAGGGCTGACGAAATATACTGACTCTTGAGCTGTCCATTATCCTGAACCTTACCTCAGTTGAAAATAGCCTATGCTGTGTAAGCAGTGGGCGCATCCAGTGTGCTTAAATAAGACTAGGAGGAGTAGGTGGCTTGTCGTTGCGAAAGGCAATCTGCAATCTGTTGTAAAGAAGTAAAGAAGATATCGTTGTGTCCTTCTGTTTACATTTATGAATATGTTCAGTCACGCTCCCAGCAAGCATAAAGTATTAAGTGCGCACTGAGAAGAATTACATTGGAATCGCATCGCAAATATGTGTTTCGCATTCGAGCTGTCAGCTTTCGGGGCACGTTCTCAAGCCACAGCCGGGGAGAAATCCAGAGACAATCTGTGCTGACTCTGCAGCAGACTGTTTgttttgactatttttttattttatttctcactcGCCGAGGTAATGAATGTCAAAATCCCAAAAGTCCACGAGTCCTTCGGTCCACAGAAACCAAAAAAAGAAGCCTGAAAAAGTTGGAACATGACTTGAGAACACGGCAGAAAAATGAGAGCCTAATCCTGTCCGCCAGAAAACAAGTGTAACCCTGCCGGCAGCAGAACATCCAGAGCTGAATCCATTTGCACgacatctctaaaaaaaaaaaacaaatgggtCTGACCTTTCTTGACCTGGCCTGGGTCCAGGGATTCATTAGGCGATGAGGATACAGCTGAATGGCATGACCTCTCATTCGTTTGTAATTAGCAATGGGAGACCATCTCAAATTCATAATTCATTTCATGGGCTGATGGTGGAATGAGATTTCCTGTACCCgttaaatgtttggacacacagaaatatatatttgatctCATTAAAAGGAACTCTGATGTGGTTGCTCTGTAAGAGCAGTTCGTTGTTAGAGTAAAGCCCAAACTAGACACCACCATTCTACACAGTCTTTTCTGGCTTGTTCCTGTTCAAAAGTACCAAACTTACTagtataaacacattttaagacaaaaataaatattgaagtCGATGCTCATATATTAATTTGGTACAAAAATTTTAAAGAATGTCACCAAAAAGACTGAAAAAGTGATTTTGATAACATTTTCTATGAATATCATGTCTATTagagattaaaaataaataacttataacacattataatgcatataATTCATAAGGTGCTATTAAAATGGCTCTAAATATGTatagaaattaaatataaaataaattaaaaagaaacacattataGAGATGCTTAGTATGCATTAGAcattttaatcataataattatcAGTGTTTATGGGATGTTATATGTTTATACCAAGCACCTCAACAAAGGAAAAACTGCCTTAACAAACCATAATATAATTACTTTTAACTACTCATAAATTatacttaatttaaatattataaatgcttatattaatgtataatgtattataaagtaAAGTGACCGAAGACCATCattcatatatattaatagatatatgaTAAATTAATCCAGATGTGTAAcagcttatgatgcattataatcatTGTACATtagtattatacatttttattaatatgtataacCATATGCATAATGCctcataaatgcattataatgtgttatgaatatgtttatggAGTCTAATAGACAAGCCATTCATATAAATGAAGTGTTACCTTGAATTCTTATGGCTCTTCATGAAGCTACAAGAGCAAAAAAAGTAGCAAGGTGTGAATCTTCATGAAGGTCAATACAGGCTACAttgaaaaatctgaaattttAGAATCTAAATGATTCATTtaacatctttttttaatcatttcaaaTCTATTGAATTCTTCTTACTCAACGTCTTCACTCCTGTGGTGAATAAATCTCTGAATTATTGAACATTAATGGGTGTTTCCAGACATTTAACTGGTACAAGGTGATTAAACATCCAAGCAATGCATCTGACTCAAAGTTAGCATTTCAATAAGCGCTGCATTAGAAGAGCCCTGGGGTGGTTTAAGGTAGCGCTGTGGTCTTTTCCAGAAGGCTCCCCCCAGCAGCTGTAGGGATTATGATCAAAGACGACCGAGCTAAGAGATATTTAACGTTCACATGATGCTGACTGTACCTTACGGGCTGGCTTCCCGGACAAAGATTAAGCCCCAGAATCAAAAGGATTTTCCACGGAGAATCACCAGTGACGCTGTCGATTAggccaagactaggcttaatccgtGTCCAGGAAACAGGCCAAGAAGCTAATGTATTATCTGTGAGTTATTTAGCAGGGCGGAAGGAACAAAATAACAGATAAAAAGTGTACAGCCCAGAAGATGGGGCTGTTTCCCGCAGCAATTAATCCCACCCATTATTTCCTAGTGTCCAACTTACTTCTTATGTATGTGTGGTCTGATTGATCTATAAGTGAAGGCTAAAAGATCTATTAGACCTCTAAtaactagggatgcaccaaatggAAAGCTTTGgct

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022679876.1 True 5006 mRNA 0.46 10 32377101 32565890
XM_022679877.1 False 5003 mRNA 0.46 10 32377101 32565890

Neighbor


gene id symbol gene type direction distance location
satb1 satb1,LOC107569796 coding upstream 574538 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 862460 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 1121793 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1393241 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 1576877 30798138 ~ 30800224 (+)
LOC103041596 LOC108439295 coding downstream 115852 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 155354 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 216184 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 339764 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 352253 32918143 ~ 33043136 (+)
G162036 NA non-coding upstream 8971 32322884 ~ 32368130 (+)
G162054 NA non-coding upstream 42073 32334507 ~ 32335028 (+)
G162052 NA non-coding upstream 43597 32330189 ~ 32333504 (+)
G162028 NA non-coding upstream 151606 32225004 ~ 32225495 (+)
G162025 NA non-coding upstream 182115 32194699 ~ 32194986 (+)
G162044 NA non-coding downstream 4662 32570552 ~ 32576305 (+)
G162043 NA non-coding downstream 11380 32577270 ~ 32579768 (+)
G162046 NA non-coding downstream 47828 32613718 ~ 32615469 (+)
G162087 NA non-coding downstream 68081 32633971 ~ 32635489 (+)
G162097 NA non-coding downstream 82269 32648159 ~ 32747711 (+)
G162032 NA other upstream 82072 32236316 ~ 32295029 (+)
G162017 NA other upstream 228911 32068862 ~ 32148190 (+)
efhb NA other upstream 771611 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1482595 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 1498774 30875038 ~ 30878327 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 148293 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3241975 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3546152 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3566525 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4188295 36754185 ~ 36754687 (+)

Expression



Co-expression Network