LOC103039334 (LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485)


Basic Information

Item Value
gene id LOC103039334
gene name LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32905654 ~ 32915649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679879.1
ATGTTTTACGCCCACTTCGTCCTCAGCAAACGTGGGCCGTTGGCCAAGATTTGGCTAGCGGCCCACTGGGACAAGAAGCTGACCAAAGCCCATGTCTTCGAGTGCAACTTGGAGAGCAGTGTGGAGAGCATCATTTCACCAAAGGTGAAAATGGCTTTGCGTACGTCTGGTCATCTTCTCCTGGGTGTGGTGAGAATCTACCACAGGAAAGCCAAGTACCTGCTTGCTGACTGTAACGAAGCCTTCATTAAGATCAAAATGGCTTTCCGACCAGGTGTTGTGGATCTTCCCGAAGACAATCGGGAGGCTGCCTACAATGCCATCACCTTGCCAGAGGAGTTCCATGACTTTGATCAGCCCCTTCCAGATCTTGATGACATAGATGTAGCACAACAGTTCACTCTGAACCAGAGCCGAGTGGAGGAGATCACCATGAGAGAAGAAGTGGGCAACCTCAGCATCATGGCAGACAATGACTTTGGTGACTTCGGCATGGATGATCGGGAGATCATGAGGGAGGAAAGTGCCTTCGAGGTGGACATCATTCACGGGTCATCTGCCTCCAACCTTTTGCTGGAAGCAGAACCTGGTCCTGCCCACCTTCCTGATAAGTCAACCAACCTTGACTATGATGACTTTGGTGAAAACAACCTGGAGAACAGTGATGGTGGAATACTTGTGGACAAACTTTTGAGCAGCGATGGTGGTGGAGGAATATTTGATGATCCTCCAGCCATCACTGACAGCGTTATGATGCCCCCAGACCACGGAGATGATGACGACGACTTTGATAACTTTTCCCCAGCCGGTGCTCCAGACAGTCCTGATTCTGGCCCTGTGGAGCCTCTACCCAACACCACAGACCAGACCGAACAGACCACGCTGGTGCCTAATGAGGAGGAGGCTTTTGCCCTGGAGCCCATTGACATCACTGtaaaagagACGAAGGctaagaggaagaggaagctgATTGTGGACAGCCTGAAGGAACTCGACAGCAAGACCATCCGCGCTCAGCTGAGCGACTACTCCGATATTGTCACCACGCTGGATCTGGCTCCGCCCACTAAGAAGCTGATGATGTGGAAGGAGACTGGAGGAGTGGAGAAGCTCTTCTCTCTGCCTGCACAGCCTCTCTGGAACAGCAGAATGCTTAAGATGTTCACACGCTGCCTGACCCCGCTGGTACCAGACGAGCTGAGGAAGAGAAGGAAGGGTGGCGAGGCCGACAGCCTGGAGGAGTTCCTGAAGGAGCTTGAGAATCCTGAGGTTCCTCGTGAAGAGCAGATCACACAGAGGAGTGATGTTATCGATCAGACCATTGTGGAGGAGCCCAGCATGCTGCAGGTTTCATCAATCGAGGGCAGCAGAACGGCTCTGGACGAGACTCTGATGCCTCCTCCTTCCAGGCAGCGGGGAGTCAAGCGCAAGTCCCAGGAGGCCGAAGCCGCTCTGCCGCCAATGGGCATCCTCGATCAGTCTCTGCAGCCAATGGAGCAGTCAGTGCTGTCCCAGCAGCTTGATATGCCACAGGTGGATCTGCCACCCGAGGACACCACCAACCTCTCCAGACTCGTCCCTGAGCTGGACCTGCTGGGAGAGAAGAGCAAAGACAAGGACGACAgcgaagaggaggaggagGAAGGAGAGGGTCAAGGAGACCAGGACCAAGAAGAGAGAAGATGGAACAAGAGAACCCAGCAGATGCTGCATGGGCTTCAGcgtGTGGTGGCGAAGACCGGAGCCCAGTCCATCAGCCTGCTGGAGCTGTGcaagaacaacaacaagaaaCAAGCCGCCGCCAAGTTCTACAGTTTCCTGGTCCTGAAGAAACAGCAAGCCGTGGAGCTGTCCCAGTCTGAGCCCTACAGCGACATCATCGCCACGCCGGGACCGCGGTTCCACCTTGTATAGATGCATGTTACTCTCTTTTTAGAAGTtgtatttaacactttttactgttcagttttttttttttttgtacctttttTCAGCTCGTTTCGGACCAATTTTTATGCATTTGAATCAAGATCTGTTTGATCATGCAGAGATTGTCCTCTGTATAGCAGGAAGGTTTGCATGTTGGTCCCCCTTTTGTACCCCTTGTAAGCTCAGTTGAATTTTACGAACCTCACTTCGTCCCGCAGACTGTTGTTTTTATCATCTTTTGGTTTTACCTGATTAGGTTTTACAGTTGAAAAGCAAGTAGAATAGATGTAtacatttttgcctttttgatAATGTCACATTTGACATGATATAAAGGTTTATTTTTGGAAGTTCTGGTGTATTTGAATGATGCAGAACATCATGCTCAACATTTTGTATCTCTCTTTTAATGATGATGGTTATTAAAGGATTATTAAAATGACAGAACCTGGGAATTCTATGCACTTAATTACAACATGGATATCCTTTAAAGCAGGtttaatattttcttaatttgctttattttcAGCTGGTGTTCCTGGATTTCATGATGGTTTTAATAGCATTACGTTTTGTTCAACTCTGTTCCACACCTCAAACTTCcttttaatacaatacaaaatttAACCTGAAATGTTATCATGTCCTTGCCTCTGTAATGTTTACATGATGGACTCTGTTTTATagtaacttttaattaaactttAAGGTCTCCCACTGTA
>XM_022679880.1
ATGTTTTACGCCCACTTCGTCCTCAGCAAACGTGGGCCGTTGGCCAAGATTTGGCTAGCGGCCCACTGGGACAAGAAGCTGACCAAAGCCCATGTCTTCGAGTGCAACTTGGAGAGCAGTGTGGAGAGCATCATTTCACCAAAGGTGAAAATGGCTTTGCGTACGTCTGGTCATCTTCTCCTGGGTGTGGTGAGAATCTACCACAGGAAAGCCAAGTACCTGCTTGCTGACTGTAACGAAGCCTTCATTAAGATCAAAATGGCTTTCCGACCAGGTGTTGTGGATCTTCCCGAAGACAATCGGGAGGCTGCCTACAATGCCATCACCTTGCCAGAGGAGTTCCATGACTTTGATCAGCCCCTTCCAGATCTTGATGACATAGATGTAGCACAACAGTTCACTCTGAACCAGAGCCGAGTGGAGGAGATCACCATGAGAGAAGAAGTGGGCAACCTCAGCATCATGGCAGACAATGACTTTGGTGACTTCGGCATGGATGATCGGGAGATCATGAGGGAGGAAAGTGCCTTCGAGGTGGACATCATTCACGGGTCATCTGCCTCCAACCTTTTGCTGGAAGCAGAACCTGGTCCTGCCCACCTTCCTGATAAGTCAACCAACCTTGACTATGATGACTTTGGTGAAAACAACCTGGAGAACAGTGATGGTGGAATACTTGTGGACAAACTTTTGAGCAGCGATGGTGGTGGAGGAATATTTGATGATCCTCCAGCCATCACTGACAGCGTTATGATGCCCCCAGACCACGGAGATGATGACGACGACTTTGATAACTTTTCCCCCGGTGCTCCAGACAGTCCTGATTCTGGCCCTGTGGAGCCTCTACCCAACACCACAGACCAGACCGAACAGACCACGCTGGTGCCTAATGAGGAGGAGGCTTTTGCCCTGGAGCCCATTGACATCACTGtaaaagagACGAAGGctaagaggaagaggaagctgATTGTGGACAGCCTGAAGGAACTCGACAGCAAGACCATCCGCGCTCAGCTGAGCGACTACTCCGATATTGTCACCACGCTGGATCTGGCTCCGCCCACTAAGAAGCTGATGATGTGGAAGGAGACTGGAGGAGTGGAGAAGCTCTTCTCTCTGCCTGCACAGCCTCTCTGGAACAGCAGAATGCTTAAGATGTTCACACGCTGCCTGACCCCGCTGGTACCAGACGAGCTGAGGAAGAGAAGGAAGGGTGGCGAGGCCGACAGCCTGGAGGAGTTCCTGAAGGAGCTTGAGAATCCTGAGGTTCCTCGTGAAGAGCAGATCACACAGAGGAGTGATGTTATCGATCAGACCATTGTGGAGGAGCCCAGCATGCTGCAGGTTTCATCAATCGAGGGCAGCAGAACGGCTCTGGACGAGACTCTGATGCCTCCTCCTTCCAGGCAGCGGGGAGTCAAGCGCAAGTCCCAGGAGGCCGAAGCCGCTCTGCCGCCAATGGGCATCCTCGATCAGTCTCTGCAGCCAATGGAGCAGTCAGTGCTGTCCCAGCAGCTTGATATGCCACAGGTGGATCTGCCACCCGAGGACACCACCAACCTCTCCAGACTCGTCCCTGAGCTGGACCTGCTGGGAGAGAAGAGCAAAGACAAGGACGACAgcgaagaggaggaggagGAAGGAGAGGGTCAAGGAGACCAGGACCAAGAAGAGAGAAGATGGAACAAGAGAACCCAGCAGATGCTGCATGGGCTTCAGcgtGTGGTGGCGAAGACCGGAGCCCAGTCCATCAGCCTGCTGGAGCTGTGcaagaacaacaacaagaaaCAAGCCGCCGCCAAGTTCTACAGTTTCCTGGTCCTGAAGAAACAGCAAGCCGTGGAGCTGTCCCAGTCTGAGCCCTACAGCGACATCATCGCCACGCCGGGACCGCGGTTCCACCTTGTATAGATGCATGTTACTCTCTTTTTAGAAGTtgtatttaacactttttactgttcagttttttttttttttgtacctttttTCAGCTCGTTTCGGACCAATTTTTATGCATTTGAATCAAGATCTGTTTGATCATGCAGAGATTGTCCTCTGTATAGCAGGAAGGTTTGCATGTTGGTCCCCCTTTTGTACCCCTTGTAAGCTCAGTTGAATTTTACGAACCTCACTTCGTCCCGCAGACTGTTGTTTTTATCATCTTTTGGTTTTACCTGATTAGGTTTTACAGTTGAAAAGCAAGTAGAATAGATGTAtacatttttgcctttttgatAATGTCACATTTGACATGATATAAAGGTTTATTTTTGGAAGTTCTGGTGTATTTGAATGATGCAGAACATCATGCTCAACATTTTGTATCTCTCTTTTAATGATGATGGTTATTAAAGGATTATTAAAATGACAGAACCTGGGAATTCTATGCACTTAATTACAACATGGATATCCTTTAAAGCAGGtttaatattttcttaatttgctttattttcAGCTGGTGTTCCTGGATTTCATGATGGTTTTAATAGCATTACGTTTTGTTCAACTCTGTTCCACACCTCAAACTTCcttttaatacaatacaaaatttAACCTGAAATGTTATCATGTCCTTGCCTCTGTAATGTTTACATGATGGACTCTGTTTTATagtaacttttaattaaactttAAGGTCTCCCACTGTA

Function

NR:

description
PREDICTED: double-strand-break repair protein rad21 homolog isoform X1

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0000228 nuclear chromosome cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679879.1 True 2651 mRNA 0.48 13 32905654 32915649
XM_022679880.1 False 2648 mRNA 0.48 13 32905654 32915649

Neighbor

gene id symbol gene type direction distance location
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 26398 32782074 ~ 32879256 (+)
LOC103041297 LOC103041297 coding upstream 175803 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 204050 32681742 ~ 32701604 (+)
LOC107196951 NA coding upstream 339764 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 1103091 31688052 ~ 31802563 (+)
LOC103043655 eif3h coding downstream 2494 32918143 ~ 33043136 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 289058 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 1155510 34071159 ~ 34092737 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 1203144 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 1260459 34176108 ~ 34199772 (+)
G162097 NA non-coding upstream 157943 32648159 ~ 32747711 (+)
LOC107196950 NA non-coding upstream 161647 32741987 ~ 32744007 (+)
G162111 NA non-coding upstream 166045 32736429 ~ 32739609 (+)
G162107 NA non-coding upstream 218110 32678351 ~ 32687544 (+)
G162099 NA non-coding upstream 250489 32652026 ~ 32655165 (+)
G162239 NA non-coding downstream 252068 33167717 ~ 33168151 (+)
G162247 NA non-coding downstream 260481 33176130 ~ 33176329 (+)
G162250 NA non-coding downstream 281316 33196965 ~ 33197176 (+)
G162255 NA non-coding downstream 337756 33253405 ~ 33253768 (+)
G162269 NA non-coding downstream 565699 33481348 ~ 33483410 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 186379 32714183 ~ 32719275 (+)
G162032 NA other upstream 610625 32236316 ~ 32295029 (+)
G162017 NA other upstream 757464 32068862 ~ 32148190 (+)
efhb NA other upstream 1300164 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 2027327 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 2892216 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3196393 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3216766 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 3838536 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4371518 37287167 ~ 37352779 (+)

Expression


Co-expression Network