LOC103043655 (eif3h)


Basic Information

Item Value
gene id LOC103043655
gene name eif3h
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32918143 ~ 33043136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679881.1
AACGGCCTGGTCTCcccctcctttctctctccctcgctaCAATGGCGGCGCGCAAGGAAACAGCAGCACCGGTGGCTACGCTATCTCTGGATTCCCAGGTTAAACGGATCCAGATAGATGGACTGGTGGTGCTAAAGATCATCAAGCACTACCATGAAGAGGGTCAGGGCAGTGAAGTGGTGCAGGGAGTCCTGCTGGGACTGGTGGTGGACGACCGGCTGGAGATCACCAACTGCTTCCCCTTCCCTCAGCACACCGAGGATGACGCCGACTTTGACGAAGTTCAGTACCAGATGGAGATGATGAGGAGCCTCCGTCACGTCAACATTGACCACCTTCACGTCGGCTGGTACCAGTCCACCTACTACGGCTCCTTCGTCAGCCGAGCTCTGCTGGACTCCCAGTTCAGCTATCAGCACGCCATAGAGGAGTCTGTGGTGCTTATTTACGATCCCATCAAGACGGCGCAAGGCTCCCTGTCCCTCAAGGCCTACAGGTTAACCCCCAAACTGATGGATATCTACAAAGAGAAAGACTTCTCTCCAGAGGGGCTGAAGAAGGCGAACCTCGGCTTCGAGCAGATGTTTGAGGAAGTGCCCATCAGCATCAAAAATTCCCACCTGATGAACGTTCTGATGTGGGAGCTGGAGGACAGGAGCACCGTGTCTGACAAGCACGAGCTGCTCAGCCTGTCTAGCAGTAACCATCTGGAGAAGAGCCTGCAGATGCTGATGGACCGCGTGGACGACAAGCAGGACATCGTCAAGTTCAACACCTTCTGCCGCAACAacagcaagcagcagcagcagaagcaccAGTacctgcagcggcggcagcaggAGAATGCCCAGCGGCAGAGTCGCGGTGAACCGCCGTTGCCGGAGGAAGATATCAGCAAGATGTTCAAGCCTCCGCAGCCTCCTCCACGCATGGACACGCTTCTCATCGCAGGACAAATCAACAACTACTGTCAGAACGTGAAGGAGTTCACCTCGCAGAACCTCGGCAAGCTGTTCATGGCGGAAGCTCTGCAGgagcgcagcagcagcaccaccagcaccaccaccagcaccaccagcaGCTGAGGAGCGGCTGGGTTTTAATTTTAGGGCCTGATGAGTGTACACTGCCAAACCTCTAACGCCCGGCCTGATCTCTCCTAAGTGCACATTAAGGCACGCTCACGTGACCCTGTAGGATCAGTGGTAACTATTGTTTGTTAATGAAACATTGCTAATAAAAGGTGTGCAtctca

Function

symbol description
eif3h Enables deubiquitinase activity. Contributes to translation initiation factor activity. Involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process and translational initiation. Located in extracellular exosome and membrane. Part of eukaryotic translation initiation factor 3 complex. Implicated in breast cancer; prostate cancer; and prostate carcinoma. Biomarker of prostate cancer.

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit H isoform X1

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03247 EIF3H; translation initiation factor 3 subunit H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679881.1 True 1255 mRNA 0.55 10 32918143 33043136

Neighbor

gene id symbol gene type direction distance location
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 2494 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 38887 32782074 ~ 32879256 (+)
LOC103041297 LOC103041297 coding upstream 188292 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 216539 32681742 ~ 32701604 (+)
LOC107196951 NA coding upstream 352253 32377101 ~ 32565890 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 161571 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 1028023 34071159 ~ 34092737 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 1075657 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 1132972 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 1170750 34213886 ~ 34217803 (+)
G162097 NA non-coding upstream 170432 32648159 ~ 32747711 (+)
LOC107196950 NA non-coding upstream 174136 32741987 ~ 32744007 (+)
G162111 NA non-coding upstream 178534 32736429 ~ 32739609 (+)
G162107 NA non-coding upstream 230599 32678351 ~ 32687544 (+)
G162099 NA non-coding upstream 262978 32652026 ~ 32655165 (+)
G162239 NA non-coding downstream 124581 33167717 ~ 33168151 (+)
G162247 NA non-coding downstream 132994 33176130 ~ 33176329 (+)
G162250 NA non-coding downstream 153829 33196965 ~ 33197176 (+)
G162255 NA non-coding downstream 210269 33253405 ~ 33253768 (+)
G162269 NA non-coding downstream 438212 33481348 ~ 33483410 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 198868 32714183 ~ 32719275 (+)
G162032 NA other upstream 623114 32236316 ~ 32295029 (+)
G162017 NA other upstream 769953 32068862 ~ 32148190 (+)
efhb NA other upstream 1312653 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 2039816 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 2764729 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3068906 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3089279 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 3711049 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4244031 37287167 ~ 37352779 (+)

Expression


Co-expression Network