LOC111194818 (LOC108413590,LOC105891915,LOC107592482,LOC108441798)


Basic Information

Item Value
gene id LOC111194818
gene name LOC108413590,LOC105891915,LOC107592482,LOC108441798
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34118793 ~ 34161754 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679885.1
ctctgaatattTCTGATTTTATCTCCGCGCATCGCGAGATTCAAATTCTTTGCGTAGGCTATTCACTAACGCGCTATGCGCACTTCGCGCCGGGCTCCCCCGCGCAGGCGGGCCCGTTCTGCGCAGACAGCGTAGCGGCTGGTGCGGAAGTGGTGCGTGGGGAATGTCGGCTGGGCTGTGATCGGTTACTCGGAGCGGATCTGAGCGGCGGGATGGCAcaACAGAAGAATCTGGAGGGATATGTGGGCTTTGCGAGCCTCCCCAACCAAGTTTACAGAAAGTCCGTAAAGCGCGGCTTCGAGTTCACGCTAATGGTTGTGGGTGAATCGGGTTTGGGCAAGTCCACGCTGATTAATTCCCTCTTCCTCACGGACCTGTACTCCTCAGAATACCCAGGACCTTCACATAGAGTCAAGAAGACTGTTCAGGTAGAACAATCCAAAGTGTTGATGAAGGAGGGCGGGGTTCAGCTGCTGCTCACGACGGTGGACACTCCAGGGTTTGGAGATGCTGTAGACAACAGTAACTGctGGCAGCCGGTCACCGATCACATCGACAGTAAGTTTGAGGATTACCTGAACGCAGAGTCTCGTGTCAACAGGAGGCAGATGCCGGACAGCCGAATCCACTGCTGCCTGTACTTCATTGCACCCTCAGGCCAcggGCTGAAACCTCTGGACATTGAGTTTATGAAACGGTTGCACGAGAAGGTGAATATCATCCCCCTGATTGCCAAAGCGGATACCCTCACCCCAGAAGAGTGCCAACAGTTCAAGAAACAGATCATGCGGGAAATCCAGGAACACAAAATTAAGATTTACGAGTTCCCAGAGACTGATGACGAGGAGGACAACAAGCTTGTGAAAAAGATCAAAGATCGGCTGCCTCTGGCTGTAGTTGGCAGTAACACCATAATCGAGGTGAACGGGAAGAAGGCTAGAGGGAGGCAGTACCCGTGGGGGGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATTCTACGGAACATGCTCATCAGGACCCACATGCAGGACCTGAAGGACGTAACAAACAACGTCCACTACGAGAACTACAGGAGCCGGAAACTAGCCGCCGTCACCTGCAACGGGATGGACAACAACAAGACCAAAGGCCAGCTCACCAAAGTTGACTCAGTGGAAGGcatGAGTCCTCTGGCTCAGATGGAGGAGGAGAGGCGAGAGCACGTGGCTAAGATGAagaagatggagatggagatggagcaGGTCTTCGAGATGAAAGTTAAAGAGAAGATCCAGAAGCTGAGAGACTCTGAGGCTGAGCTGCAGCGACGTCACGAGCAGATGAAGAAGAACCTGGAGGCTCAGCACAAGGAGCTGGAGGAGAGGAGACGCCAATTCGAGGACGAGAGAGCCAACTGGGAGACTCAGCAGCGCCTCCTGGAGCAGCAGAAACTCGACGCATCCAGgactttggagaaaaataagaagaaaggGAAGATATTTTAAAACCTGTGCAGGATGACCATTTCCATTGCCACTTTTACCCCAGACCAGTTTATCTGTGTAGCCTCCGGCCGGTGCTGCACGCTGCGCTCGGTGTCGTCTGCTGCCGCTGCTGGAGGCCAACAGCTGGGTGTGGACTAAAGTCCGCCTTACCGTCGGCAAGCCAAACCCAAACCCTTAAAAATCCCTGTACATAGAATCCCACCTCTATCTATCCTTAACCATTTAACAGCAGGTGTCCACATTTATATACGCCACTGTCCAACAGGTTCTTCAGTAGTTACTGACGCTGTTTCCTCCAAATTCTGAGACGATCTGATCTAAAGACTGTACCTCTTTATTTTACGTATCATTCATAAACCTCATTCCAGCAAAGCGGCAAAAAAACAGGCGATAACAGCAGATTAATAATCCCAATAAATCTTACATGGGAGTGATGAGCgaattttctattttgtttttttttttttggtatgtgTTTATTGAAAGTGTTTCTAAACTATATGCTGTTTTGACCTGTCTAGTCACTTTCCTTGGACCACCTCATATAAGTTCATTAATATTTcagttagtttattttttatatatatatatatatatatatatatatatctatatatgtatcCCGAGCCAgctgaaataatattttttctatgtTGTAGAAACTCGGCAGAGCAGTTTTGTAAAGGAATGAATTGACCGGTTCAGATGTGTTCCTCAGACATGTGCTGTGATTCTGAAAGGTTGTAAACCCTTTTCATGCATAACCTCACTTGTTATTGTAAACTGCGGTAAAAGCTCGAGTTCACAGCACGTTTACCCCCCTTTGGTTATGTACTCCTctgtatttttgatattttatttttcatttgttattGTACAGTCACTTAATAAACGTGTGATATGGATTGA
>XM_022679886.1
ctctgaatattTCTGATTTTATCTCCGCGCATCGCGAGATTCAAATTCTTTGCGTAGGCTATTCACTAACGCGCTATGCGCACTTCGCGCCGGGCTCCCCCGCGCAGGCGGGCCCGTTCTGCGCAGACAGCGTAGCGGCTGGTGCGGAAGTGGTGCGTGGGGAATGTCGGCTGGGCTGTGATCGGTTACTCGGAGCGGATCTGAGCGGCGGGATGGCAcaACAGAAGAATCTGGAGGGATATGTGGGCTTTGCGAGCCTCCCCAACCAAGTTTACAGAAAGTCCGTAAAGCGCGGCTTCGAGTTCACGCTAATGGTTGTGGGTGAATCGGGTTTGGGCAAGTCCACGCTGATTAATTCCCTCTTCCTCACGGACCTGTACTCCTCAGAATACCCAGGACCTTCACATAGAGTCAAGAAGACTGTTCAGGTAGAACAATCCAAAGTGTTGATGAAGGAGGGCGGGGTTCAGCTGCTGCTCACGACGGTGGACACTCCAGGGTTTGGAGATGCTGTAGACAACAGTAACTGctGGCAGCCGGTCACCGATCACATCGACAGTAAGTTTGAGGATTACCTGAACGCAGAGTCTCGTGTCAACAGGAGGCAGATGCCGGACAGCCGAATCCACTGCTGCCTGTACTTCATTGCACCCTCAGGCCAcggGCTGAAACCTCTGGACATTGAGTTTATGAAACGGTTGCACGAGAAGGTGAATATCATCCCCCTGATTGCCAAAGCGGATACCCTCACCCCAGAAGAGTGCCAACAGTTCAAGAAACAGATCATGCGGGAAATCCAGGAACACAAAATTAAGATTTACGAGTTCCCAGAGACTGATGACGAGGAGGACAACAAGCTTGTGAAAAAGATCAAAGATCGGCTGCCTCTGGCTGTAGTTGGCAGTAACACCATAATCGAGGTGAACGGGAAGAAGGCTAGAGGGAGGCAGTACCCGTGGGGGGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATTCTACGGAACATGCTCATCAGGACCCACATGCAGGACCTGAAGGACGTAACAAACAACGTCCACTACGAGAACTACAGGAGCCGGAAACTAGCCGCCGTCACCTGCAACGGGATGGACAACAACAAGACCAAAGGCCAGCTCACCAAGAGTCCTCTGGCTCAGATGGAGGAGGAGAGGCGAGAGCACGTGGCTAAGATGAagaagatggagatggagatggagcaGGTCTTCGAGATGAAAGTTAAAGAGAAGATCCAGAAGCTGAGAGACTCTGAGGCTGAGCTGCAGCGACGTCACGAGCAGATGAAGAAGAACCTGGAGGCTCAGCACAAGGAGCTGGAGGAGAGGAGACGCCAATTCGAGGACGAGAGAGCCAACTGGGAGACTCAGCAGCGCCTCCTGGAGCAGCAGAAACTCGACGCATCCAGgactttggagaaaaataagaagaaaggGAAGATATTTTAAAACCTGTGCAGGATGACCATTTCCATTGCCACTTTTACCCCAGACCAGTTTATCTGTGTAGCCTCCGGCCGGTGCTGCACGCTGCGCTCGGTGTCGTCTGCTGCCGCTGCTGGAGGCCAACAGCTGGGTGTGGACTAAAGTCCGCCTTACCGTCGGCAAGCCAAACCCAAACCCTTAAAAATCCCTGTACATAGAATCCCACCTCTATCTATCCTTAACCATTTAACAGCAGGTGTCCACATTTATATACGCCACTGTCCAACAGGTTCTTCAGTAGTTACTGACGCTGTTTCCTCCAAATTCTGAGACGATCTGATCTAAAGACTGTACCTCTTTATTTTACGTATCATTCATAAACCTCATTCCAGCAAAGCGGCAAAAAAACAGGCGATAACAGCAGATTAATAATCCCAATAAATCTTACATGGGAGTGATGAGCgaattttctattttgtttttttttttttggtatgtgTTTATTGAAAGTGTTTCTAAACTATATGCTGTTTTGACCTGTCTAGTCACTTTCCTTGGACCACCTCATATAAGTTCATTAATATTTcagttagtttattttttatatatatatatatatatatatatatatatctatatatgtatcCCGAGCCAgctgaaataatattttttctatgtTGTAGAAACTCGGCAGAGCAGTTTTGTAAAGGAATGAATTGACCGGTTCAGATGTGTTCCTCAGACATGTGCTGTGATTCTGAAAGGTTGTAAACCCTTTTCATGCATAACCTCACTTGTTATTGTAAACTGCGGTAAAAGCTCGAGTTCACAGCACGTTTACCCCCCTTTGGTTATGTACTCCTctgtatttttgatattttatttttcatttgttattGTACAGTCACTTAATAAACGTGTGATATGGATTGA
>XM_022679887.1
GGGATTGAAATAAATAGCAcaACAGAAGAATCTGGAGGGATATGTGGGCTTTGCGAGCCTCCCCAACCAAGTTTACAGAAAGTCCGTAAAGCGCGGCTTCGAGTTCACGCTAATGGTTGTGGGTGAATCGGGTTTGGGCAAGTCCACGCTGATTAATTCCCTCTTCCTCACGGACCTGTACTCCTCAGAATACCCAGGACCTTCACATAGAGTCAAGAAGACTGTTCAGGTAGAACAATCCAAAGTGTTGATGAAGGAGGGCGGGGTTCAGCTGCTGCTCACGACGGTGGACACTCCAGGGTTTGGAGATGCTGTAGACAACAGTAACTGctGGCAGCCGGTCACCGATCACATCGACAGTAAGTTTGAGGATTACCTGAACGCAGAGTCTCGTGTCAACAGGAGGCAGATGCCGGACAGCCGAATCCACTGCTGCCTGTACTTCATTGCACCCTCAGGCCAcggGCTGAAACCTCTGGACATTGAGTTTATGAAACGGTTGCACGAGAAGGTGAATATCATCCCCCTGATTGCCAAAGCGGATACCCTCACCCCAGAAGAGTGCCAACAGTTCAAGAAACAGATCATGCGGGAAATCCAGGAACACAAAATTAAGATTTACGAGTTCCCAGAGACTGATGACGAGGAGGACAACAAGCTTGTGAAAAAGATCAAAGATCGGCTGCCTCTGGCTGTAGTTGGCAGTAACACCATAATCGAGGTGAACGGGAAGAAGGCTAGAGGGAGGCAGTACCCGTGGGGGGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATTCTACGGAACATGCTCATCAGGACCCACATGCAGGACCTGAAGGACGTAACAAACAACGTCCACTACGAGAACTACAGGAGCCGGAAACTAGCCGCCGTCACCTGCAACGGGATGGACAACAACAAGACCAAAGGCCAGCTCACCAAAGTTGACTCAGTGGAAGGcatGAGTCCTCTGGCTCAGATGGAGGAGGAGAGGCGAGAGCACGTGGCTAAGATGAagaagatggagatggagatggagcaGGTCTTCGAGATGAAAGTTAAAGAGAAGATCCAGAAGCTGAGAGACTCTGAGGCTGAGCTGCAGCGACGTCACGAGCAGATGAAGAAGAACCTGGAGGCTCAGCACAAGGAGCTGGAGGAGAGGAGACGCCAATTCGAGGACGAGAGAGCCAACTGGGAGACTCAGCAGCGCCTCCTGGAGCAGCAGAAACTCGACGCATCCAGgactttggagaaaaataagaagaaaggGAAGATATTTTAAAACCTGTGCAGGATGACCATTTCCATTGCCACTTTTACCCCAGACCAGTTTATCTGTGTAGCCTCCGGCCGGTGCTGCACGCTGCGCTCGGTGTCGTCTGCTGCCGCTGCTGGAGGCCAACAGCTGGGTGTGGACTAAAGTCCGCCTTACCGTCGGCAAGCCAAACCCAAACCCTTAAAAATCCCTGTACATAGAATCCCACCTCTATCTATCCTTAACCATTTAACAGCAGGTGTCCACATTTATATACGCCACTGTCCAACAGGTTCTTCAGTAGTTACTGACGCTGTTTCCTCCAAATTCTGAGACGATCTGATCTAAAGACTGTACCTCTTTATTTTACGTATCATTCATAAACCTCATTCCAGCAAAGCGGCAAAAAAACAGGCGATAACAGCAGATTAATAATCCCAATAAATCTTACATGGGAGTGATGAGCgaattttctattttgtttttttttttttggtatgtgTTTATTGAAAGTGTTTCTAAACTATATGCTGTTTTGACCTGTCTAGTCACTTTCCTTGGACCACCTCATATAAGTTCATTAATATTTcagttagtttattttttatatatatatatatatatatatatatatatctatatatgtatcCCGAGCCAgctgaaataatattttttctatgtTGTAGAAACTCGGCAGAGCAGTTTTGTAAAGGAATGAATTGACCGGTTCAGATGTGTTCCTCAGACATGTGCTGTGATTCTGAAAGGTTGTAAACCCTTTTCATGCATAACCTCACTTGTTATTGTAAACTGCGGTAAAAGCTCGAGTTCACAGCACGTTTACCCCCCTTTGGTTATGTACTCCTctgtatttttgatattttatttttcatttgttattGTACAGTCACTTAATAAACGTGTGATATGGATTGA

Function

NR:

description
PREDICTED: septin-7-like isoform X3

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16944 SEPT7, CDC3; septin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679885.1 True 2402 mRNA 0.48 15 34118793 34161754
XM_022679886.1 False 2381 mRNA 0.48 14 34118793 34161754
XM_022679887.1 False 2203 mRNA 0.46 14 34124626 34161754

Neighbor

gene id symbol gene type direction distance location
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding upstream 26056 34071159 ~ 34092737 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding upstream 121349 33204707 ~ 33997444 (+)
LOC103043655 eif3h coding upstream 1075657 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 1203144 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 1239537 32782074 ~ 32879256 (+)
LOC103028011 LOC108413592 coding downstream 14354 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 52132 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 138264 34300018 ~ 34315224 (+)
LOC103044586 NA coding downstream 157459 34319213 ~ 34349880 (+)
pepd pepd coding downstream 645752 34807506 ~ 34839027 (+)
G162373 NA non-coding upstream 21196 34093913 ~ 34097597 (+)
G162336 NA non-coding upstream 231949 33837477 ~ 33886844 (+)
G162329 NA non-coding upstream 321119 33797440 ~ 33797674 (+)
G162282 NA non-coding upstream 413404 33704083 ~ 33705389 (+)
G162281 NA non-coding upstream 450296 33661839 ~ 33668497 (+)
G162403 NA non-coding downstream 8646 34170400 ~ 34177227 (+)
G162405 NA non-coding downstream 41149 34202903 ~ 34203106 (+)
G162408 NA non-coding downstream 58358 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 237480 34399234 ~ 34399448 (+)
G162505 NA non-coding downstream 339846 34501600 ~ 34517219 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1399518 32714183 ~ 32719275 (+)
G162032 NA other upstream 1823764 32236316 ~ 32295029 (+)
G162017 NA other upstream 1970603 32068862 ~ 32148190 (+)
efhb NA other upstream 2513303 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3240466 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1646111 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1950288 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1970661 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2592431 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3125413 37287167 ~ 37352779 (+)

Expression


Co-expression Network