LOC103028011 (LOC108413592)


Basic Information

Item Value
gene id LOC103028011
gene name LOC108413592
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34176108 ~ 34199772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679889.1
CCCACATTTCCCCACGTGAAAGTGATCATCATGGTTCCAGCGCTGAAACTTCGTAGACTTCCACTTTCACTATCTATTATCAGCGGGTCCAGCCGCCCCTGCAGCCCGCCATGACCCGCTCCAGCCCCGGACCCGCCCGGCTCTGGCTCCGcctgtgctggagctgctgctgcctgctCGCCGCGGTGGAGGGCCGGCTGTTCACCGCGAAGCTCTGGAGCGTTCGGGCCGGCCTGGGAGGCTTCGAGCCCGGGGACGCGGCCCCAGCGTTCAGCGTCTCCACCCTTGATGGAGAGTTCTCCTACCCGCCCAAGGActcctcatcatcatcctcctcctcctccctcagaCCCGCACTGATCATTCACGCCTTCACCAACAAATCCgccttcctggaggtgctgtgGACCTCCAACATGTCCCTCTCGGACCTGGCGGAGTTTCTCCCGCCCAGCGCCCAGGTGCTCTTCATCTCCATGGATGATTCAGCGGCCGAGCAGGCGCTGTGGATGCGGGAGCAAGTGTACGGAGCTGCGGGAAGCAGGTGGAAGGAGATAAGGTCCAGACTGCACTTCTCTCCTGTTCCTCTTCATATGCTGGGAAACTGGATCCCCAGAGTGTTTTACTCGTGGGGTTGTGGAGGACACAACTGTGGTCTTGCTCAGGTGGTCTTCACCTCTTCAGAGTGGTCGGTCCCTGTGATCTCTAAACGCCTGAACGCCAGATACGATTGGCTGAATGGACGCTGGGATCCAAAGCCGTACGTTCTGGCTGAAGCAGGCGATGGATGTAAACCCGTCCCCGAGGTTGCGGGGGTGGTTGCCTGGGTGTCTGAAGGCGGCTGCTCCTTTTTCACAAAGaTTAAAACAATGTCCGAGTCCAATGCTActggtgttctggtgtatgcCTCACCGGGGAACCCTATACAGGATATGAACTGTGTTGGAGATGAATGTAACACCACCCTCAACATTCCAGCCGCCATGCTGCACATTGAACCGGCTGTGGTGGAAGCCCTATCGAAggggaagtcagtgaatgtgtCATTCCAGGTCACTCCATCTCCAAACTTCTTCTTCGCGATAGACCACCAGGGGGCGCTAGCAGAGATGGGCTGGTTCCTCTACCCTACTTTCAGATTCCTGAGCTGGCAGGCTGAGTGgtTTGACTTCTACACAGGCTTGCTGGAACAGGCTAAAAAACCTGCAGACGTGGTGCCGGTGTTTGATAGAGTGCTGATGCAGGGGGAGGCCGGGGCCCAGGCTGTGGTGGACCTTCCCCCAGATCTGCTGAGGTATGATGTGCTGGAGCTGGACGCTGCTCTGTCCTGTCCTGGGCTCAGGGATGAGACGTGTGCTCATTGGGATCACACTGTGCAGCTGTTCGTGTGCTGCGACCGGTTCAGTCCTCACTGCAACCAGGAGCTGGGCCGCTGGATCACCGCCTTCCGCAGAGGTACAGGTCGTTGGCTGACGGACGTGTCGCCCCTCCTTGCGCTGCTGAACGGCGAGCGCTGTTCCCTGACCATGAAGACCGTCCCCTGGGCGATGCCCTGGATGACCTCCCTGAATCTGCGCTTCAGCTATAGCAACAGCTCAGGAAACTCCTCAGAGAACTTGTACCCGTTCAAGCTGGTCTCACTTTACAATGGGGGGACGTTCGACCGGGACTACAACAAGAGATTCCAGGAGATCAAGTTTGATATTCCAGCTTCAGCCAAGaaggtggagTTGTATGCAGTAATCACGGGTCACGGCAGTGATGATAACGCGTGTTGTGAGTTCTGTGTGACGTCACACTTCTTCAGTGTAAACGGCATCTACAACAACTCTCGTATATTCGACTCGGCTGgttcaGCTCTGGGCTGTGCTCTGAGAGTCGGTGAGGGAGGAGTACCTAACGAGCACGGCACGTGGCTGTACGGCCGCGGCGGCTGGTGCGACGGTCTGCAGGTCAATCCGTGGAGGATCGACATCACTCCCCAGGTAAATATGGGTGGAACCAATACGATCCTCTACTTCGGACTCTTCGACGGACGGAACCCCAATCCAGCCAGAGATCCAGGGTACATCATAATGTACTCCTATCTCATATTTTATAAGTGATTTCTACAAGTGAATCTGCTTGAATGATCGACTGTACAGAGAAAAGCCATGattaaagacttttattttggaacACTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108413592

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679889.1 True 2183 mRNA 0.56 12 34176108 34199772

Neighbor

gene id symbol gene type direction distance location
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 14354 34118793 ~ 34161754 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding upstream 83371 34071159 ~ 34092737 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding upstream 178664 33204707 ~ 33997444 (+)
LOC103043655 eif3h coding upstream 1132972 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 1260459 32905654 ~ 32915649 (+)
LOC103027681 NA coding downstream 14114 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 100246 34300018 ~ 34315224 (+)
LOC103044586 NA coding downstream 119441 34319213 ~ 34349880 (+)
pepd pepd coding downstream 607734 34807506 ~ 34839027 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 867546 35067318 ~ 35512777 (+)
G162373 NA non-coding upstream 78511 34093913 ~ 34097597 (+)
G162336 NA non-coding upstream 289264 33837477 ~ 33886844 (+)
G162329 NA non-coding upstream 378434 33797440 ~ 33797674 (+)
G162282 NA non-coding upstream 470719 33704083 ~ 33705389 (+)
G162281 NA non-coding upstream 507611 33661839 ~ 33668497 (+)
G162405 NA non-coding downstream 3131 34202903 ~ 34203106 (+)
G162408 NA non-coding downstream 20340 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 199462 34399234 ~ 34399448 (+)
G162505 NA non-coding downstream 301828 34501600 ~ 34517219 (+)
G162518 NA non-coding downstream 455189 34654961 ~ 34655440 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1456833 32714183 ~ 32719275 (+)
G162032 NA other upstream 1881079 32236316 ~ 32295029 (+)
G162017 NA other upstream 2027918 32068862 ~ 32148190 (+)
efhb NA other upstream 2570618 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3297781 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1608093 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1912270 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1932643 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2554413 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3087395 37287167 ~ 37352779 (+)

Expression


Co-expression Network