LOC103044586


Basic Information

Item Value
gene id LOC103044586
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34319213 ~ 34349880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679894.1
TATCTCTCCTGTGTATCTGTCAGGCTACGGAGTCGAGGAGGAGAAGTTAGCTGAAAATATGGGAGATAAACGTCTAAACCAGGACTGAGCTGCACTAAATAACCCTGCGAGTGAAGTTTAGAGTTTGTAGAGTCTCTGCTGGCTCAGGGTTTTACTGTTTAGTATCGGGTTTAAACAATAAAGCCAGGCTTCCTCTTCTCGTTTCTCCACTAAACTCAGAGTTTCAGCTACAGCATGCAGATAGCAGTGCTTCCAGACGCAGGCAGGACAGTTTTACAGGCTGTTCAGGACAATCCAGGCTCATATTCCCACAGCAGGCTGGCCTGGAACGACCACAggacaccaccaccaccatccccTTCCTCCTTTAACTCCAGCATTGGGGGTCGAGCAGCAGTCAGCAGGCTGAAGCTGAAGCCCACCCATGGTCTTTGTTCCAGTGGCCCTGTGGAGAAGACCCTGCACCAGGAGAAGCGTGGAGCTTCCTCAGCTGGGGAAGtggaGAAGTTAAAGCCGCAGTCAGCTGGACCTCCACATCAGCAGAACTCCTCGATGGATCTGATAACTGAGCAGTACCTGTGTGGTCAGTGGCCACGAGagcttcatcatcatcatcagcccCAGCGCACCTGCATGACCGATAAAGCCACACAGACCCCTGTTTTTTGGTCAGATGATCTGGAAGGCCTGTCGATACAGAAGCGTTCAGCATCCTGGTCCAGTGCTGAACACCGTGAAGAGATCGCAAAACTGTGTCACCAGCTCAGGAGAAGTGTGCTGGGATTTCATCGAAACAAAGAATCACCAGAATCACCATCACTGTCTTTATGCAGCCAAGTGCAGacTAAACTACCTCCTGCCTCCTCGACCAGCATGAGCGTCACAAAGCCAGCAGTGTGTAGAGTGAGCAGTTATAACGACAGCATTAACCGTGAGCTCGAGAGTGTGTTCCTCAGCGACACCTGCAGGCAGCAAGAAaggGAGTTACAGGATGGGCGCTGTGCTCCGGTTCCTCCTCATCAGAACAGTGATACTCACACACAGAGTAcagatgcacagctttcaatCAGTGACCATCACTGTCCACACCTTTTCCCTTTTGCTGCTGATGCCCCACATGGAACAGAACTCTTCACCAGCAGGTCTGAGTGTGGTGAAGGCTGTGACTATGTAAATGAGAGCAGCTCACCGCTGCCCCCACTGGCCAGTTCCCCCAAACCCAACAACAGCTTCATCTTTAAACGGGTTCCTCCTGAAGGCTGTGAGAAGATCAAGGTCTTTGAGGAGACTTTcTCTTGTAGGTCTAGAGGATTCCCGGTCTTCTCCTGCCCTGACCGGAACAAAGTGAGCTTCATCCCGACCGGCTCTGGACCGTTCTGTCCCGTCAGACAGCCGGGTTCCTCCCTCTGTCCCTCAGACTGTAGACCTGTCTCTCAGAACGCTCAGCCCACAGGGCAGTTAAAACAGACTGGAGGACAGGACGTCCCGCCTTCACACTGCTTCAGCTCATACAGGACTCAACACTactaatcaatcagtcaatcaaccaaccaatcagggACCACGATCAGCAGTGAGGTGTATGGATTTCTCCTAGTGTGTGGATTTCTCATACTTAAGTACTTATAATACTTAAGGAAGCAATGCAGCTACTGTGTTTGAACGGTGAACTGTCTGATATGTCAttatacactgacataccaAATGTCAGTAGATGTGATGGATTCACtagtctgttcacatggacaattctagccagaagctgccAGTCATGATCTTTAACGCTCACTACACTGCGATAGAGCTTAGATTCGGCTCcaaaaatccagcccgacccgATACGCCCtataaactgtttttgtgagcccaagcctgatttaaacctggcatttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679894.1 True 1897 mRNA 0.50 8 34319213 34349880

Neighbor

gene id symbol gene type direction distance location
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 3989 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 101410 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 119441 34176108 ~ 34199772 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 157459 34118793 ~ 34161754 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding upstream 226476 34071159 ~ 34092737 (+)
pepd pepd coding downstream 457626 34807506 ~ 34839027 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 717438 35067318 ~ 35512777 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 1200012 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 1436450 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 1539074 35888954 ~ 35909612 (+)
G162408 NA non-coding upstream 97877 34220112 ~ 34221336 (+)
G162405 NA non-coding upstream 116107 34202903 ~ 34203106 (+)
G162403 NA non-coding upstream 141986 34170400 ~ 34177227 (+)
G162373 NA non-coding upstream 221616 34093913 ~ 34097597 (+)
G162336 NA non-coding upstream 432369 33837477 ~ 33886844 (+)
G162442 NA non-coding downstream 49354 34399234 ~ 34399448 (+)
G162505 NA non-coding downstream 151720 34501600 ~ 34517219 (+)
G162518 NA non-coding downstream 305081 34654961 ~ 34655440 (+)
G162530 NA non-coding downstream 427327 34777207 ~ 34783691 (+)
G162533 NA non-coding downstream 442653 34792533 ~ 34792826 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1599938 32714183 ~ 32719275 (+)
G162032 NA other upstream 2024184 32236316 ~ 32295029 (+)
G162017 NA other upstream 2171023 32068862 ~ 32148190 (+)
efhb NA other upstream 2713723 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3440886 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1457985 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1762162 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1782535 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2404305 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 2937287 37287167 ~ 37352779 (+)

Expression


Co-expression Network