pepd (pepd)


Basic Information

Item Value
gene id pepd
gene name pepd
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34807506 ~ 34839027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679895.1
AGCGTGGGTCAGCTGATATAAACACGTGACCGCGTGGCTCAGCTGGGAGAGGAGAGCGATGGCTGCTGCTGGAGGgaaAGCTGTGTACTGGATGGGGAAGGACACCCTGCAGGTGTCGGCTGCTCTGTTTGCGGAGAACCGCCGGCGCCTGTGTGCGGGTCTGAAGGGTAGACAGGGGCTTCAGCCCAAATCACTGGTGCTGCTGCAGGGAGGAGAGCAGAAACAGAGATACTGCACCGACACAGACATCCTCTTCAGACAGGAATCCTTCTTTCACTGGACCTTTGGCGTGACTGAGGCTGACTGCTATGGAGCTGTTGATGTGGACACCGGAAAAAGCCTCCTCTTCGTACCCAAGCTGCCCGAGAGCTACGCTACCTGGATGGGAGAgATCTACCCAAAGGAGCACTTTAAGGAGAAGTACGCAGTGGATGAAGTGCACTACACCAGCGATATAGCTGATGTCCTCACCAAGATGAAGCCATCCGTCCTCCTCACACTGagAGGGCTGAATACAGACAGTGGCAGTACGACTCGTGAGGCATCCTTTGAAGGAATCAGCAAcTTCCAAGTGGACAACTCCTTCCTGCACACTATCATTGTGGAATGTCGTCTGATTAAGACTGATATGGAGTTGGAAGTTCTGCGCTACACCAACCGCATTTCCAGTGAAGCTCACAAAGAGGTAATGAAGACTGTGAAGCCCGGCCACAAGGAGTATGAAATGGAAAGtctgTTCAGTCACTACTGCTACTCCCGTGGAGGAATGCGGCACACCTCCTACACCTGCATCTGTGGAAGTGGGAATAACTCCTCTGTTCTGCACTATGGCCACGCTGGAGCTCCCAATGACAAGACCATTGAGGATGGAGACATGTGTCTGTTTGACATGGGTGGAGAATATTACTGCTACACATCTGACATCACCTGCTCCTTCCCAGCAAACGGAAAGTTCACCCCCGACCAGAAGGCCATTTATGAGGCTGTGCTCAAATCCTCCCGTGCCGTCATGGCCGCCATCAAACCAGGTGTGAAATGGACTGATATGCACCGCCTGGCTGACCGGGTTCACCTGGAGGAGCTGGTTAAGATTGGCATTGTGCATGGGAATGTGGAGGACATGCTTAAAGTTCACCTGGGATCTGTCTTCATGCCCCACGGACTGGGACACCTGCTGGGCATCGACACGCATGATGTAGGAGGATATCCAGAGgGTACTGAGCGTGTGGATGAGCCGGGGCTGAAGAGTCTGCGTATGGGCCGTGTGGTGCTGAAAGGCATGGTCCTCACAGTGGAGCCCGGGATCTACTTCATCAACCACGTGCTGGACAAGGCCCTGGCCTCCCAGGAGCAGTGCGGCTTCATCAACAACGACGTGCTGGCTCGATTCCGCGGATTTGGAGGGGTGCGTATTGAAGATGATATTGCAGTGACTGAGGACGGTATGGAACTTCTCACCTGTGTCCCGCGCACTGTGGAGGAGATCGAGGCCTTCATGGCGGACAGAAGCCCCGAGAAATCCTTCAGTCCTGCAGTCAGCAGCGAGAAATTCTAAAATCTCCATGAATAAAGCACTCCTCTGTTATCTCGTTCTCTGCAGAATTACTTCATTCGCTTTTTGTTTCTGATTTGGCAAAACACAGTTATTGTTTTTAAAGGGATTTAAAGAATTTGGCACGATGGAAAAGCCCTCTCCTCCTACACAGTTTACATACAATCAAATGAAGGACCTGAAGAGACCTAATCGTCTACTGTAGAATTAAATACAGTTTGATTACACTTGTTTGAATGGTCATAATGACCATATTCTGCTTTTCTTGGTCAGTTATGCATcgattaaaatgtaattaaactgtgaatgtatggaattaaaaaaaatagcacctCTGAAGAAACCAAGTAGTATTAACACAGCAGACTCTGAGTATATGTGAGAAGTTCTAGCAGAACTAAATTATGTAGCTAtaattctctgattttgtgcTAACAATCTGTGCATAATATGCATGTTTAACACAGTTCTTTAagcaataaatgcattttctaaaataatgaaaataaataaataaataaataaatgatttgatGCTTTATTTGTAAATCCAGGCCCATTTTTACTTTCTGCGAGTTTTATGTTCAGTGCCTCAAAATATGAAAACATGAGCACAGCAGAGACTTGACACTTGCATACACTGCAGTGTACTGCCAATGTAAATTTACCGGTAATCTGATGTAGTAAAAGTACATACTGTATGTCTTATGTTACCGTATTTGGTTTGCttgatttacagttttttttttgtcttttggcAATTCATTTCTTATAACCAAACAGCCTTGttcttaaataaacttttttccaAGCATTCTA

Function

symbol description
pepd Predicted to enable manganese ion binding activity and metalloaminopeptidase activity. Acts upstream of or within endocrine pancreas development and pancreas regeneration. Is expressed in blood vessel; eye; neural crest; optic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in prolidase deficiency. Orthologous to human PEPD (peptidase D).

NR:

description
xaa-Pro dipeptidase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
K14213 PEPD; Xaa-Pro dipeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679895.1 True 2371 mRNA 0.47 15 34807506 34839027

Neighbor

gene id symbol gene type direction distance location
LOC103044586 NA coding upstream 457626 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 492282 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 589703 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 607734 34176108 ~ 34199772 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 645752 34118793 ~ 34161754 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 228291 35067318 ~ 35512777 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 710865 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 947303 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 1049927 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 1156945 35995972 ~ 36064422 (+)
G162535 NA non-coding upstream 13674 34793569 ~ 34793832 (+)
G162534 NA non-coding upstream 14360 34792899 ~ 34793146 (+)
G162533 NA non-coding upstream 14680 34792533 ~ 34792826 (+)
G162530 NA non-coding upstream 23815 34777207 ~ 34783691 (+)
G162518 NA non-coding upstream 152066 34654961 ~ 34655440 (+)
G162581 NA non-coding downstream 5260 34844287 ~ 34892308 (+)
G162583 NA non-coding downstream 69710 34908737 ~ 34909108 (+)
LOC111194737 NA non-coding downstream 106617 34945644 ~ 34954135 (+)
G162597 NA non-coding downstream 252844 35091871 ~ 35093395 (+)
G162599 NA non-coding downstream 322354 35161381 ~ 35175910 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 2088231 32714183 ~ 32719275 (+)
G162032 NA other upstream 2512477 32236316 ~ 32295029 (+)
G162017 NA other upstream 2659316 32068862 ~ 32148190 (+)
efhb NA other upstream 3202016 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3929179 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 968838 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1273015 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1293388 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 1915158 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 2448140 37287167 ~ 37352779 (+)

Expression


Co-expression Network