LOC103045107 (dhdh,LOC108431994,LOC107665090,LOC106587215)


Basic Information

Item Value
gene id LOC103045107
gene name dhdh,LOC108431994,LOC107665090,LOC106587215
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37401528 ~ 37407914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679914.1
ATAAGTATAAGCTGTGGTGCCTGGCGCCCCCTGCCGGTCTCAGTCTGTACTCAGTtcagagcagtgtgtgtttataaaggCGGCATCATGGCGGTGAGGTGGGGGATCTGCAGCGCCGGGAAAATCAGCCACGACTTTACTGTAGCTCTGAAGACCCTCCCTGAGGAAGACCACCAGGTGGTGGCTGTGGCGGCACGAAATCTCCAGCGTGCTCAAGAATTCGCACAGAAACACAACATCCCCACGGTGTATGGCAGCTATGAGGAACTGGCCAGAGATCCCAACATCGATGTGGTTTACGTGGGAACCATCCATCCACAACATCTTCTGGTGGGTGTCCTCTTTATGAACTCCAAGAAGAACATTCTGTGCGAAAAACCTCTAGCAATGAACATAAGAGAAGTGCAGGAACTGGTGGCCACAGCAAAGaagaacaatgtttttttgATGGAGGCCGTGTGGACGAGGTTCTTCCCCGCCTCGCTGGAGATATCCAGGCTGCTGTCTCAGGACGCCATAGGGGAGGTGAAGGTGGTGAAAGCGGATTTTGGCGTGCCCCTGCTGAACACCCCTCGCTCTGTGGAGAAGGAGCTGGGTGGGGGTGCGCTGCTGGATATCGGTATCTACTGTCTCCAGTTTGTCCTCATGGTGTACGACGGGGAGAAGCCTGAGAGCATCCAGGCCACTGGAGTCTGTCTTAACACAGgagtGGATGAAAGCATGGTGATTACGATGAAGTTCTCGCGGGGCAGACTGGCAGTGTGCTCATGCACAGTATCTGCAGAACTTCCAAATGATGCCATTATCAGTGGGACTAAAGGAACCATCAAGATCCCGGCTCATATGTGGTGTCCCACGTCACTGATAGTGAACGGTAAAGAGACGCAGTATCCAGTGCCTGAGCCTTATCTACCGCTGAACTTCATCAACAGCACGGGTATGAGATACGAGGCTGAGGAGGTGCGGCAGTGTCTGCttaaaggtctgAAGGAAAGCTCCAGGATGTCCCACGCTGACTCAGCTCTGCTGGCGGAGATCATGGATGAAGCTAGAAGACAAGTTGGGGTGGTCTACAGCCAGGACCACCTGTGACCCTGTACATCACCTGTTTAGCtgtttaacaataaacagaatttggtcattttctcatttattctcTTCTAATTTACAGCCGTGGCTGTAGCATTACTGCAGAACAGCAGCTCGAAGGTTCAGCAGTCTTAAAGAGGAAGCAGTTATTTCACAGGTTACACAGGGTTTCTGAGGCCTCGTATTGTTTTAGACACGTTACTATAACTGTTTGTTTAGTGTAGgattatactatactgtactattgtACTATACTACAGCCTGCTGTACTTTGATTTACTCAGCATTACCCTAAAAGATTTAAACACCACAGTTACAGCCAGTTTGAGTGCTGCACAGATTTAAGTAGCAACTGGTTACATTTGGTCAATAATATgtaattaaacctttaaaatttta

Function

symbol description
dhdh Predicted to enable D-xylose 1-dehydrogenase (NADP+) activity. Predicted to be involved in D-xylose catabolic process.

NR:

description
PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047837 D-xylose 1-dehydrogenase (NADP+) activity molecular_function

KEGG:

id description
K00078 DHDH; dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679914.1 True 1488 mRNA 0.49 7 37401528 37407914

Neighbor

gene id symbol gene type direction distance location
LOC103045417 NA coding upstream 1689 37387494 ~ 37399839 (+)
LOC103026877 unc13c,LOC108411445 coding upstream 139543 36970710 ~ 37261985 (+)
LOC111194719 NA coding upstream 961720 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 1178493 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 1253426 36142088 ~ 36148102 (+)
parp6 parp6 coding downstream 47821 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 182071 37589985 ~ 37835900 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding downstream 536287 37944201 ~ 37946249 (+)
LOC111194723 LOC107704663 coding downstream 1536488 38944402 ~ 38945904 (+)
LOC111194822 LOC107569781 coding downstream 1538262 38946176 ~ 38951124 (+)
G163095 NA non-coding upstream 27323 37374006 ~ 37374205 (+)
G163087 NA non-coding upstream 29680 37366118 ~ 37371848 (+)
G163071 NA non-coding upstream 100406 37300767 ~ 37301122 (+)
G163049 NA non-coding upstream 150190 37250743 ~ 37251338 (+)
G163045 NA non-coding upstream 309946 37090108 ~ 37091582 (+)
G163110 NA non-coding downstream 29654 37437568 ~ 37438049 (+)
G163161 NA non-coding downstream 140123 37548037 ~ 37548293 (+)
G163241 cox5ab,LOC107595344,LOC107713225,LOC103046663,LOC108432642,LOC107665137 non-coding downstream 556416 37964330 ~ 37977105 (+)
G163247 NA non-coding downstream 577144 37985058 ~ 37987068 (+)
G163288 NA non-coding downstream 1263368 38671282 ~ 38672233 (+)
LOC103046025 hcn4,LOC108263998 other upstream 48749 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 646841 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 1231783 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 1281126 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 1586735 35807865 ~ 35814793 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 2078 37409992 ~ 37411969 (+)
reln reln other downstream 2167175 39575089 ~ 39788454 (+)

Expression


Co-expression Network