LOC111194820 (celf6)


Basic Information

Item Value
gene id LOC111194820
gene name celf6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37589985 ~ 37835900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679921.1
TTACTGTGCCAGGGAGTCTGCACTGAAGGCTCAGAGTGCTCTTCATGAACAGAAGACTCTGCCTGGGaTGAACCGGCCCATCCAGGTGAAGCCAGCAGACAGCGAAGGACGGGGAGaaGACCGGAAGCTGTTTGTAGGGATGTTGGGGAAGCAGCAGAGTGAGGAGGACGTGCGCCGGCTGTTTGAGGCGTTTGGGCAGATTGAGGAGTGCACCGTGCTCCGGGGGCCTGATGGGGCCAGCTGTGCCTTTGTGAAGTTTTCCAGCCATGCAGAAGCGCAGGCAGCCATCAATACCCTCCATGGTGGACAGACCATGCCGGGGGCATCCTCCAGCCTGGTGGTGAAGTTTGCAGATACGGATAAGGAGCGGACAATGCGCAGGATGCACCAGATGGCGGGCCAACTTGGCATTTTCAGCCCCATGACCATCCAGTTTGGGGCTTATGGAGCTTACACACATGCTCAGATGATGCAGCAGCAGGCCGCTCTTATGGCCGCCTCACAGGGCTCGTATCTCAACCCCATGGCAGCCATAGCGGCCGCCCAGATGCAGCAAATGGCAGCTTTCAACGTCAACGGCCTGGTGGCTGCCCCTATGACGCCCTCTTCAGGCACCAGCACACCTCCAGGGATCAGTGCCACAGCAGTGCCCAGCATCGCTGCTCCCATTGGGGTGAACGGCTTTAGCGCCCTCCCACAGAGCAACGGCCAGCCAGCCTCCGAACCCATTTACACCAATGGAATTCACCCGTACCCAGCACAGAGTCCAACAGTGACAGACCCTCTCCAGCAAGCATACGCGGGTGTGCAACACTATGCAGCAGCCTATCCTGCCGCCTATGCGCCAATCAGCCAAGCGTTTCCCCAGCAACCAGCCATCATCCCCCAGCAACAGCGCGAAGggccTGAGGGCTGTAACCTGTTTATCTATCACCTGCCGCAGGAGTTCGGGGACGCCGAGCTCATGCAGATGTTTCTGCCCTTTGGCAACGTCATCTCTGCCAAAGTCTTTGTGGACCGGGCAACCAATCAGAGCAAGTGTTTCGGCTTTGTGAGTTTTGATAACCCATCCAGTGCTCAGGCTGCCATTCAGGCCATGAATGGTTTTCAAATTGGCATGAAAAGACTCAAGGTCCAGCTGAAGCGGCCAAAGGACGCCAACCGCCCTTACTGATCCACGAACATCCACATCCAGGCAGGGCCAATCGTAGCTCAAGCTGGCCCACGTCTACGGTCAGGGGGGCAGTACAGTACCCACGGCTGTAAGTTAACACCATGGTGTCATATTGTTTTGGATGACGTCATGTGTACTGCTGTGGTTTTGAGTGGCATGACGTGCTGTTGATCtgttgctctctttctctatatctctatatcgTGGCCATGTTTTTGGATTCTGTATTCATGGAGTGCAGTATTTTGTTTGCACCTTTGGTAGCTGGTAGCTGTTGTTCGTAAACCTGCTGACTGGTTGATTTCCATGGGATGTGAAGTTTTaaccttttttgctgttttaaatgtgagtcGTGTGCTCTTGTTATTTTGCGTGTGAATATGACAGTGTTTCGATATTTTGctcttttctctatctctcgctTTTTCTCCACATGGGCAGCTTTTCTTTGTGTGTAATCAAAACAAGACAATCCATCgactctctatcactctcccAGACAAAGGTTGTTAGGAACCTAGGATCCTGATGCTTCCCACtgtataacataaaaaaattcaaCCATTTCTAACACAAGAGGCCACCCAACTATTGGTACAAGCAGTGgttcatctcacgcctcgactacagTAATGCCAAACTAACGGGCCTCctggcctgcgtagtaaaaccaatCCAGATTATCCAGAACACAGCAGCacatctggtcttcaaccagtcAAAACCAACGGGCAAATAT

Function

symbol description
celf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF6 (CUGBP Elav-like family member 6).

NR:

description
PREDICTED: CUGBP Elav-like family member 6 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679921.1 True 1913 mRNA 0.52 12 37589985 37835900

Neighbor

gene id symbol gene type direction distance location
parp6 parp6 coding upstream 82788 37455735 ~ 37507197 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding upstream 182071 37401528 ~ 37407914 (+)
LOC103045417 NA coding upstream 190146 37387494 ~ 37399839 (+)
LOC103026877 unc13c,LOC108411445 coding upstream 328000 36970710 ~ 37261985 (+)
LOC111194719 NA coding upstream 1150177 36391175 ~ 36439808 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding downstream 108301 37944201 ~ 37946249 (+)
LOC111194723 LOC107704663 coding downstream 1108502 38944402 ~ 38945904 (+)
LOC111194822 LOC107569781 coding downstream 1110276 38946176 ~ 38951124 (+)
LOC111194738 LOC104947953,LOC106536897 coding downstream 1256579 39092479 ~ 39094807 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding downstream 1337424 39173324 ~ 39175138 (+)
G163161 NA non-coding upstream 41692 37548037 ~ 37548293 (+)
G163110 NA non-coding upstream 151936 37437568 ~ 37438049 (+)
G163095 NA non-coding upstream 215780 37374006 ~ 37374205 (+)
G163087 NA non-coding upstream 218137 37366118 ~ 37371848 (+)
G163071 NA non-coding upstream 288863 37300767 ~ 37301122 (+)
G163241 cox5ab,LOC107595344,LOC107713225,LOC103046663,LOC108432642,LOC107665137 non-coding downstream 128430 37964330 ~ 37977105 (+)
G163247 NA non-coding downstream 149158 37985058 ~ 37987068 (+)
G163288 NA non-coding downstream 835382 38671282 ~ 38672233 (+)
G163296 NA non-coding downstream 901819 38737719 ~ 38740775 (+)
G163297 NA non-coding downstream 906895 38742795 ~ 38744936 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 178016 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 237206 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 835298 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 1420240 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 1469583 36112042 ~ 36120402 (+)
reln reln other downstream 1739189 39575089 ~ 39788454 (+)

Expression


Co-expression Network