LOC111194822 (LOC107569781)


Basic Information

Item Value
gene id LOC111194822
gene name LOC107569781
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 38946176 ~ 38951124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679931.1
aatgttttctgcaGAAATGAGCCAACCTATGATGCCTGCTACAATATTTTCTGTGAAAAAGTCATCCGCCAGAGAATAATTGTAAACCAAGAGATACTAACAATGACCCACCTAAGAAGGATCTTCATAAATCTGGTGAAGGACCATGAAAAACTTGATGCTTCAAACTACagGCAGGACAAATTGAAGCGGAGGTTGGCACGTGACTTCCCCCAGCTGGTGTTTTACTCTCCCAGCAAGCGCAACATGTGTCAGATGGTTTTTGTTGAAACGTTATCTGCAGATACATTGATAGACAGGCTACCTCACCCATTAGCCACAGGAACAACAACTGAGTCAACTGAGGTAAGCCAAACTGAAAGTGACTGTGAAAAAAACCCAAATACAACAGCTGGTCAGGAACGGTCAAGTACAGGTGTCTCAGTCAATACTTTAGAGGACACAAGGACACTTTATAGTGCAGCTCTGATTTTAAAGAAGCTTTTGCGAGACTCTTCTGGGATGACATGCCCATGGCCACCCACATCAGATGACTTAAATGTAACTGAAGCAAAATCTGTTGTCCCACTCGAATTGTACAATCTGATTTCTTGGATTGTGGGTGCAGCTGAGGAACCAACGCTGGCCTGCTACGTTGATATTCCAGATGATATGAACCTAAAAGTGATATCCATTTGTCAAGACATTCTGTACCTTGCATCTAAGGGCCGGAGACAGACACCTAAATCATTGTGTCTTGGTCTTACTGTTCGCCATTTAACAGGCTCATCACACATTGTATCTCTTCTTAATAGACTAGGACATTGTGCATCATGGGACACAGTAGTCAGTCTAGACACTAGCCTTGCCCAACTTCAATTAGTAGAAGGCAGAGACAAAATACCCAAAGGATTCTCAAAGAAAACTCCTACAGTACTTGTGTGGGACAACATTGACTTTGGGGAAGAGACACTGTCGGGTCATGGAACTACTCACCACACAAATGGAATTATGCTGCAAAGTTCTGTAGTTGAACCTGTGCCAGCAATGAACAGACAACCGCTACAAAAGGGAGTTTCTACATTGAAACCACCACCTAGCATCCCTGTCGAACACTACCATCAGTTCAAAAGACAAGGACATCAGAATTTGTTTCATCATGAAATGATTCCATTAGAAGCTGAGGCCTACAGACTAAACACTGTGTCTGCTGCAAAGACTGAACTGGCATATGTTTTTCTAAAGTGCGTAGATGCTGGAAAATGCACAATCCCAAGCTGGACAGGTTTCCATACATTGCTTCAAGGTGATGGTACTCTGCAAAAGTCGGCATTGTATTATCTGCCAGTCATTGAGGCTTCACCAACAGAGATGTCAACTGTAAACACCATTCTGAAGCGAAGTGTCCAAATTGCTGATCAGCTAGAACTGGACCATATTGTATTAGTTTTTGACCAAGCAATATATGCCAAAGCTCAGCAAATTCGCTGGAAAGATGACAGCCTTACACGTCGTTTAGTGATAAGACTAGGTGAATTTCACACATGCATGTCCTACCTTGGTATTCTTGGAAAACGGTTTGGAGATGCAGGGCTGGTAGACATACTTATAGAGTCTGAAATTGTTGCCACAGGTTCCATCAATGGGGTGATCAGTGGTCATCACTACAATCGCAGCATGAGGGCGCACAAACTTTTGTATGAGAGTCTTCAACGCATCCGATTTAATGCATTCTTGGACTCTTTACCTCCAAAGGAGAAAAATGAGTGTATGGATGTCATCAATCAGATCAAATGTGCATTCCCAAACAGAACAATTGATGtgttgtgtgaaaatgtgaaacttgatCAAATGTGTTCAAAGTATGAAGACTTTGTGACAAGACAAAATGCAGAAAGCCCAACTTTTGCCTTCTGGAGTTCATACATTGACATGGTGCAGATACTCCTTCTGTTTGTCAGAGCAACACGAGAATCAGACTGGCAGCTTCACTTGTCAACACTGCGTTTGATGATGGCGTGGTTTTTTGCCTATGATCGTGTAAATTATGCTAGGTATTTACCTTCATACTGGCTGGAAATGGTCAGTTTGCCCCTAACACATCCTTCTTGCCACAGTGACCTCTGTGTGAAAGGCCAGTGGACTGTCCAGCGTCAAAATGTCCATGGATTTGCTTCAATTGCTTGTGACCAGGCTATCGAGCAAACATGCAATAGAGACTCCAAGACAAAAGGTGGTTGGATAGGCATGACACAGAATCGAGCTGCAGTCTATCGCTGGATATTGTCACAACATGAAAGGGCTGCCATAGCAAGACAATGTGAGTCAATGGCAGGTAAATCTCCTGAAATACGGAAACGAAAAGATCTTGACACCACACGAATTCATGCTGATGAAAAGGCTGTGACCAGAATCATATCCACGCTAGATTCCATGCTGAACCCTTTTGACACACACCGGGATGGCATTGTGTGTCTTAGCTCTGGGGCAGTTGCAACTGAAGAAGTCCAGAAGGATTTGCTTGCAGCTCCAGAAATAGGAGAGACTGCTTTCAATGAGTTTATAAGCCAAAGGCTGTTAACACCATCAGTTGACATATTTGCTCCCATCAAAGCACAAAAACTGAAGACATTCAGTGACCAAGcaaagacaaagaaaagacCTGCTGCAAGCAAAGACGTGATTCTCTGTGCTGATAAAAAGCTATTCTCCAGACTACTCATCATTGGTCAGAGTAGAAAGACTGATCTGAGAGAAATTCTTTCATACTCCTTAGGAATTGTTTCATATCCTTTAGCCAGTTCTGATGGTTCACttgctaaaacaaacaaatctgcTCTTCTGGATTTATTGGAGACGAAAGGTGGTGACTGCTTAGTTGAAAAAGTTCCAGCAAATGGAGCTATTCTCTTTGATGGCATGGCAGTCATTCAAGCCATTCGGTCTGTACCAAGTACATTTGGAGAGCTTGGTGAGACTATACTACAGTACATGATTAAGCTTGCGCTGAAGCACAAGTGTACACGGATTGACTTTGTGATTGACCGGTATCCAgaaatttgtataaaaaattTGGAACGGTCACATAGAGCTGGAGGTGGTACACAACAGGTGCACATTTTTGGACGGGACCAGAGGACACCAACACAATGGAAAAAGTTTCTGTCAGACGGAACAAACAAAGAGGCACTGGCAGAATTTCTGTTTGAAGTATGGCAAGGTGCTGATCTTACCAAGGTGGGCAAGGATTTAAGCTTGTACATAGCTCACGGAGAACTGTGTCACTGTGTGACTGCAACAAATGGTGTACAAACTTTGAGTGCTGTTGTAGATCTGACATGTGATCATGAGGAGTGTGACACCAGGTTGTTTTTACATGCACAACATGCTGCACAGGAACATCAGACTGTAGTTATCAAGAGCCCTGATACTGATGTGGCAGTGATTGCTATAACTTTGCAGAGAGCTTTACGatgtagtttatattttttcactgGAGTTAACAACAGAACAAGAATCATTGATATAGCTAAGGTGTCATCAGCTCTTGACACCAGTGTGTGTTCAGCACTTATTGGGATCCATACCTTCTCAGGTTGTGACTCTACAAGTGCCTTTCAAGGAAAGGGCAAAAGAAAGACATTTTCTGTTGCCTCAGAGAAAGAGGAGTACCTGACTGCATTTACAAATCTGGGCAGCAGTTTTAACCTGGATCAGTCTACTTTTGAAGTACTTTGCAAATATGTGTGCCATCTCTATGGCCAGACATCTGCCAAGAATGTAAACGATGCCAGATACAAAGCATTCTGCATGTCATCCTCAGCTTTGCCAGAACTATCCATGCCCCCGACTAGTGACGCCCTGTACCAGCACTGCAAAAGGGCAAACTACCAAGCAGCAGTAATGAGACACTctctaaaaagtaaaatatgtgcCCCTTCACCCATTGGAAATGGATGGCACCTTGAGAATGGAGAGTTGGCAGTGACCTGGATGACAAAATTACCTGCCCCTGAAAGTGTGCTGCAGGTAGTTCACTGCAGTTGTAAACAAGGCAAATGTGAGACAGGAAGATGTTCCTGTATGAGTGCTAGACTATGTTGTACTGATTTATGTAAATGTCAAAATTGTGAAAATGTCTCAAAAGAAACAGAGCAAAATGCTACATGGGCTGACAACTCTGATGAAAGTGATGTGGATGAATAATATTAATGAGTAAAAGAAGAACTCTGGACTGATGATGCATCGCAGCAGTCTGGAAAGAGATACTGTTGGATTTGAGATTAAGAACACATGCATGCACTAGCCATATTTTTTCAATGTTAAAATGAACTAAGCTTTGAATGTAACACATGATTCTATACTATGCATTAAAAGGTTTTAAGATGTATTGCTTTCATTGAACTGTCAACtgttatgtattatttaaaactaaatttgTGCAGTATCCTTTTGATACATTTCAGCCACCTTGGCTCAACGtctgtatattttctttttttctgatttcacAGTTGCtactgaattttttttgtttataaaacatCAGCGTATAAAACATTGAATTGTGTTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107569781

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679931.1 True 4553 mRNA 0.42 2 38946176 38951124

Neighbor

gene id symbol gene type direction distance location
LOC111194723 LOC107704663 coding upstream 272 38944402 ~ 38945904 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 999927 37944201 ~ 37946249 (+)
LOC111194820 celf6 coding upstream 1110276 37589985 ~ 37835900 (+)
parp6 parp6 coding upstream 1438979 37455735 ~ 37507197 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding upstream 1538262 37401528 ~ 37407914 (+)
LOC111194738 LOC104947953,LOC106536897 coding downstream 141355 39092479 ~ 39094807 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding downstream 222200 39173324 ~ 39175138 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 234098 39185222 ~ 39191405 (+)
pik3c2a pik3c2a coding downstream 320812 39271936 ~ 39337878 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding downstream 536642 39487766 ~ 39492076 (+)
G163386 NA non-coding upstream 26488 38917939 ~ 38919688 (+)
G163382 NA non-coding upstream 65248 38880389 ~ 38880928 (+)
G163379 NA non-coding upstream 72321 38873408 ~ 38873855 (+)
G163349 NA non-coding upstream 142988 38802968 ~ 38803188 (+)
G163297 NA non-coding upstream 201240 38742795 ~ 38744936 (+)
G163420 NA non-coding downstream 85746 39036870 ~ 39042425 (+)
G163421 NA non-coding downstream 102270 39053394 ~ 39091133 (+)
G163443 NA non-coding downstream 154681 39105805 ~ 39106049 (+)
G163444 NA non-coding downstream 156663 39107787 ~ 39129586 (+)
G163465 NA non-coding downstream 225076 39176200 ~ 39178877 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1534207 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1593397 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2191489 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 2776431 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 2825774 36112042 ~ 36120402 (+)
reln reln other downstream 623965 39575089 ~ 39788454 (+)

Expression


Co-expression Network