tspan3 (tspan3,tspan3a,LOC107690355)


Basic Information

Item Value
gene id tspan3
gene name tspan3,tspan3a,LOC107690355
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39185222 ~ 39191405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679937.1
agagagagagagagagaggagagagagagaggcagagagtgagtgagtgagcgagcaagagagacagaaagagagagagagaccgcgGTATGGACTCCGCAGGACTGCCAGTCTACATATAGTCAGTGGTGTTTGTTGTTGCTGTAGATTAATCTGATGATGGGTCAGTGTGGAATCACCTCCTCGAAGACTGTGCTGGTCTTCCTCAACCTGATCTTCTGGGCTGCAGCTGGCATCCTGTGTTATGTTGGTGCGTACGTGTTCATCACATATGATGACTATGACCACTTTTTCGAGGATGTGTACACCTTGATCCCTGCTGTTGTCATCATTGCTGTCGGCGGATTGCTGTTCATCATTGGCCTGATTGGATGCTGTGCAACAATTCGTGAGAGTCGTTGTGGACTGGCCACGTTTGTCATCATCCTCATTCTGGTCTTTGTGACGGAGGTGGTTGTGGTTGTGCTTGGCTACATTTACAGAGCAAAGGTGGAAGAAGAGGTTAATCATTCAATTCAGAAGGTGTACAATGAATATAACGGCACCAACTCAGATGCACCCAGCCGCGCTATTGACTACGTGCAAAGACAGCTTCATTGCTGTGGAATCACCAACTACTTGGACTGGAGAAACACGAGCTGGTTTAACGAGTCGCGGAACAACAGTGTACCCCTGAGCTGCTGCAAACCCAACGTGAGCAACTGTACCGGCTCCCTCTCGCGCCCTGGAGACCTGTATCCtgagGGATGTGAAGCTCTAGTTGTGAAGAAACTGAAGGAAATCATGATGTATGTCATCTGGGCTGCGCTGACATTTGCCGCAATTCAGATGCTCGGGATGCTCTGTGCCTGTGTGGTGCTGTGTCGCAGAGGCCGGGACCCCGCCTACGAGCTTCTGATATCCGGAGGGACGTACGcgtgaaaaacacacacacacacacacacaacacacacacacacacacacagggctcggggttctgtcagtgtgtgatgGTACTCTGCTGATGCCCTTATCTTTCTGCTATACGATTTAGACAGGGTCTCTCACACTGTGCGCTGGTGATGGGTGAAGCAGCGtagtacatttatatttatttacatgtcTCAATTTTAAACGGTAAAACggtcattttaaatgttttgtttttttctttctcaaaatgctaaaagccaAATTTAGAAACCTTGTTTCTAAATGAgaaaactgcttgttttttgtgAGACTGAGCATTTTTGCTCACGTGAACGATGGCATTACTgtattaacagaaaatgtggGATTTCTGCTTTCCTCATGTTTGTTTGCACTATGTGTACAGTTACTGATTATTTTAACGTCAGTGGTCATTGAGATCATGCTCGTGAATGTTGTTTAGGACTGGTTTTTCCCTGcactgtatctgtctctgctgtgcCACCCATCACCAGATCACAAACATCAGCCTCCCCAAGATCGCTCAGCAACACGACGCCCATCTTTAAACAGAGTGTGAACTGGCAGGAAAATCACCTTGAGATAATGATCCCTCATTATACATACGCTGTTTTGTGGATTATGCTTTACTCACTACCTTCAATGTATTTTAGCACTGTTTTAATTTTCCTCCttcctgtgtttgtgtggagtttAGTATTTGGGAAGTAGATTTTAAAGTTGGTTTGGAAACCATATAGCGATGTCGAACAACGTAAACATttgaaatgaatgtaaatagAGGGAAAACGAATTAAACGTAATTTTGACATTGCAA

Function

symbol description
tspan3a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; fin; gonad; heart; and integument. Orthologous to human TSPAN3 (tetraspanin 3).
tspan3 Located in extracellular exosome.

NR:

description
PREDICTED: tetraspanin-3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17293 TSPAN3; tetraspanin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679937.1 True 1752 mRNA 0.45 7 39185222 39191405

Neighbor

gene id symbol gene type direction distance location
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding upstream 10084 39173324 ~ 39175138 (+)
LOC111194738 LOC104947953,LOC106536897 coding upstream 90415 39092479 ~ 39094807 (+)
LOC111194822 LOC107569781 coding upstream 234098 38946176 ~ 38951124 (+)
LOC111194723 LOC107704663 coding upstream 239318 38944402 ~ 38945904 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 1238973 37944201 ~ 37946249 (+)
pik3c2a pik3c2a coding downstream 80531 39271936 ~ 39337878 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding downstream 296361 39487766 ~ 39492076 (+)
LOC111194742 NA coding downstream 623591 39814996 ~ 39820624 (+)
LOC103034226 NA coding downstream 646632 39838037 ~ 39927918 (+)
LOC103039568 sox9 coding downstream 1073258 40264663 ~ 40270386 (+)
G163465 NA non-coding upstream 6345 39176200 ~ 39178877 (+)
G163444 NA non-coding upstream 55636 39107787 ~ 39129586 (+)
G163443 NA non-coding upstream 79173 39105805 ~ 39106049 (+)
G163421 NA non-coding upstream 94089 39053394 ~ 39091133 (+)
G163420 NA non-coding upstream 142797 39036870 ~ 39042425 (+)
G163474 NA non-coding downstream 10928 39202333 ~ 39221652 (+)
G163491 NA non-coding downstream 57812 39249217 ~ 39249676 (+)
G163495 LOC107567882 non-coding downstream 66033 39257438 ~ 39263780 (+)
G163504 NA non-coding downstream 174189 39365594 ~ 39371719 (+)
G163587 NA non-coding downstream 236497 39427902 ~ 39428604 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1773253 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1832443 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2430535 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3015477 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 3064820 36112042 ~ 36120402 (+)
reln reln other downstream 383684 39575089 ~ 39788454 (+)

Expression


Co-expression Network