trip12 (trip12,LOC107679016,LOC107710892)


Basic Information

Item Value
gene id trip12
gene name trip12,LOC107679016,LOC107710892
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1567115 ~ 1622172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679960.1
gacagaacaccggcagCTGCGGAACCAAGCTGAAGACGGACCTGTTTAACTAGCAATGAAGGCTGATTCGGGAGAGCGCGTCTGTTAGAGGCGGTTCGGCTTGTAATGGCGAGTTTAGCAGGCTGGGTTAGCTTTCAGCTTCTCTAGTCTAGATTTCACGAGCTGGGGGTTGttcgtttgttttgttttccacgAACAACATCGACAACTTTGCTAGCGCTGCGTCGTAGCTGTAATGTTAGTGAggaggctaagctaagctaacttgcAGTCTGGCTGCTTCAATAGGACACGgtcagctagcttagctttggCTAGCTAGGTTACACGTCGACAGATTTGGGCTGATTTTAAACCATTCCATCTCACTGCACACGGCTGCTGGTTGGGGCTTTTGCACACGGCTGTGAATGGTAGTGTATAGTAAGGGTATGTCCCTTCTGGAGAGAGGTGCCAATGTCCAACCGGCCTAATTCCAATCCAGGGGGGTCACTGCGCCGTTCACAGAGGAACACAGCCGCGGCCCAGCCACACGACCACACACTTGCTGGAAGGTTGCAGTCAGAGCACGCCAAACAAAAAGCAATTTCCCCACCTGAAAGTAGAAGATCATATTCTAAAGCTTCCAAAGCCCCGCCCACCACAGCCGCTGGCTCCGCCCGTGGCCACACCTCCCGCAGaaacagtctctctcactcagtatcagatccagattcaGAAGCAGCAGGAAGTTCAGGCCAGCAGGAGCAGCGTGAAGGCGGCAGCTCTAGCGTTAGCAACGTTAGTTCCAGTCGCTCTCTCAAAAGAAACTCTGCCCCTGAGCACAACAGCACCGGCTCCTATTCCCCGAGTCCAGCCAAGCGGCCCAAAGCCCATTCCGAAGGCTCAGTCGCCGGGCCCTCGGACCCACCCGGAGCCTCTGAGCCCAAATCCAAGTCCAAGAAGCGCCGGTTAGCGTCGGAGCTGCCCCCCAAGGCCGCCAGTCGAAAGAGCAGCCCGGGTCCCGGGCCTAGCGGGGCCTCCAGCGCCTCCTCTGCCTCTCACAAACGAAAGAAAGCCGACGCTTCCTCCTCGTCCTCTTCCTCTTCGTCCTCCTCGTCCTCTTCCTCGTCTCTCGGGGGCCCACCGCCCCCCCGCAGCGACACCGGCCGGCCAGCCAAACCCTCCAAGCTGGCGTCCAAACCGGCCGCATCAGCCAAAGCCGGGTGCAGCGCCGTCACcgactcctcctcctcctctgcctCTTCTTCCTCcgcatcctcctcttcttcctcctcggCGGCCACAGGCGTGAACAGCTGCGCCCCTCCGCAGGGTGCCCGGCTGAAGCAGGGTAAGGACCAGAGTAAATCACGCAGATCTCGCTCGGCCTCCTCCCCCTCGCCCCGCAGGAGCAGCCGCGATAAGGAGCAGCCCAAAGCCGCGGGATCCTCCAAGTTTGAGTGGACGTCTCGTTTCAACCCCAAAGTCAACCTGCCAAAGCCCAGACTGTCCCTGCCCGGGTCATCCAAGCCGGAGAGCTCGTCCAAACCCGGACCGTCCGGACTGCAGGCCAAACTTGCAAgTTTGAGGAAGTCCAGTAAGAAGCGTAGTGAGTCTCCCCCAGCAGAGCTCCCCAGCTTTAGGAGGAGCACACGCCAGAAGACCACGGGCTCCTGCGCCAGCACCAGGttattaCGCCATAAGAAAAGCGTAGACACTGAACATCTTTATCCCTCTCAAGCCTCTAGCTCAGTGGCCGGAGCTGTGGGTATGACCACATCTGGAGAGAGTGAGTCGGACGACTCTGAAATGGGCCGATTACAAGCCCTACTGGAGGCCCGTGGTCTCCCCCCTCACCTGTTTGGGCCCCTTGGACCTCGAATGTCCCAACTGTTTCACCGCACCATTGGCAGCGGTGCCAgTTCAAAAGCTCAGCAGCTGCTGCAGGGATTGCAGGCTACAGGTGATGAGTCTCAGCAGCTTCAAGCGGCTATAGAGATGTGCCAGCTGCTGGTGATGGGTAACGAGGAGACACTGGGCGGCTTCCCCGTGAAGAGTGTTGTCCCTGCCCTGATCACACTGTTACAGATGGAGCATAATTTTGATATTATGAACCATGCCTCTCGTGCTCTGACCTATATGATGGAGGCCCTGCCTCGCTCCTCCGCTGTTGTGGTGGATGCAATCCCAGTCTTCCTGGAAAAGCTTCAGGTGATCCAGTTTATTGATGTGGCGGAGCAGGCTCTGACCGCTCTGGAGATGCTGTCACGGCGGCACAGCAAGGCCATCCTGCAGGCTGGCGGGTTAGCGGACTGTTTGCTGTATCTGGAGTTTTTCAGCATTAACGCTCAGAGGAATGCGTTAGCTATAGCCGCTAACTGCTGTCAGAGTATAACTCCAGATGAGTTCCACTTCGTGGCCGACTCTCTGCCTCTGCTCACCCAGAGACTTACACACCAGGATAAGAAATCTGTGGAAAGCACATGTCTGTGTTTTGCCCGGCTGGTGGACAACTTTCAGCATGAAGAGAATCTGCTGCAGCAGGTCGCATCCCGGGACCTGCTGACCAACATCCAGCAGCTGTTGGTGGTCACTCCACCCATACTGAGCTCCGGGATGTTCATTATGGTGGTCCGCATGTTCTCCCTCATGTGCTCCAACTGCCCATCCCTTGCAGTCCAGCTGATGAAGCAGAataTTGCAGAAACTCTGCGCTTTCTGCTTTGTGGAGCATCTAACGGGAGCTGTCAGGAGCAGATTGATCTGGTACCCAGAAGCCCCCAGGAACTTTACGAGCTCACATCGCTTATATGtgagcTGATGCCGTGCCTCCCTAGAGAGGGCATCTTTGCGGTGGATGCCATGCTCAAAAAGGGCagtgcccacactgcagaaggTGCTGTTTGGCAGTGGAGGGATGACCGTGGCCTTTGGCATCCCTACAACCGCATCGACAGCCGCATCATTGAgacgGCCCACCAGAACGGTGAAGATGAGATCAGTCTGTCTACGCTGGGCCGTGTTTATACCATTGACTTTAACTCTATGCAGCAGATTAACGAGGACACCGGTACAGCCAGAGGCATCCAGAGAAAACCAAACCCACTGGCCAATCCCAACACTGgAGGTCATCTGGAGGTGCGTGGTGAGGACGCTCGCGCTCAGCTGATGAAGGAGGACCCTGAGCTGGCAAAGTGTTTTATAAAGACGCTGTTCGGTGTGCTGTATGAAGTTTACAGCTCCTCTGCCGGACCTGCCGTCAGACACAAGTGCCTTAGAGCTATCCTCCGCATCATCTACTTTGCAGATGCTGAGCTGCTGAAGGACGTCCTGCGCAACCACGCTGTGTCCAGTCACATAGCCTCCATGCTCTCCAGTCAGGACCTGAAGATTGTAGTAGGCTCACTGCAGATGGCAGAGATCCTCATGCAGAAACTTCCTGACGTGTTCAGCGTCTATTTCAGAAGAGAagGTGTGATGCACCAGGTGAAGAACCTGGCTGAGTCAGAGACGTTTTTCACCAGCCCCCCCAAGGCTTGCACAAGTGGGACCACCAGCCTTTGCACCACAACCATCACAACGGCAACCACCACTGCCGCGTCCAACGTCACTCCGGACCTCGGCTCTCCAAGCTTCCAGCATAGCATGGATGACTCCCTGGACCTCAGCCCGCAAGGTCGTCTGAGTGATGTTTTGAAGAGGAAGCGGCTGCCGAAGCGAGGACCACGCCGCCCCAAATACTCTCCCCCCAGAGACGACGATAAAGTGGACAATCAGGCTAAGAGTCCAACCACTACAGCGTCCCCTAAATCCTCCTTCCTGGCCAGTCTAAACCCTAAAACCTGGGGCAAGCTGGGAACCCAGACCAACAGCGCCAACTCCGAGCCATCCCGCACGGCCGGGGTCAGCGGCCTCGCCAGAGCCACGCCCAAAGACTCTGTCTCTAATAAcagAGATAAGATTAAAGCGTGGATTAAGGAGCAGGCCAGTAAATTTGTAGAACGATATTTTAACTCTGAGAACGTGGACGGCAGCAACCCAGCACTCAACGTCCTGCAGAGACTCTGTACTGCTACAGAGCAACTACATctgcagGTTGATCGGGGTGTGGAGTGTCTGGTAGAGATCTGCAGTATCGTGTCTGAGTCGGACGTGTCGTCGTTTGAGATCCAGCACAGTGGACTAGTGAAGCAGCTGCTGCTCTATCTGACCTCGAACAGCGAGAGAGACACGGTCAGCAGAGACCAGAGGATCAAGAGGTTCCTGCACATCTTCTACGGCTGCCCTATGCCGGGGCAGGAGACGTTGTTCCGCTTGGAGCCGACAGAGAACGGTCCACTGCTGGCACTGGTGCACAAAATGAACAGCTGTCTGAGTCAGATGGAGCAGTTTCCCGTTAAAGTTCACGACTTTCCCAGTGGCAACGGAAACGGCAGCAGaGGTTCTCAAGCCCTGAAGTTCTTTAACACACACCAGCTGAAGTGCCAGCTGCAGAGACACCCAGACTGCACCAACGTCAAGCAGTGGAAGGGAGGGCCTGTTAAAATTGACCCCCTGGCGTTGGTACAGGCCATCGAGAGATATCTTGTTGTTAGAGgttaCGGCAGAATCAGAGAAGAGGATGAAGACAGTGATGACGATGGTTCAGATGACGAAATTGACGAATCATTGGCTGCTCAGTTCCTGAACTCAGGCAGCGTTCGGCACCGGCTGCAGTTTTACATCGGAGAGCAACTGCTGCCCTACAACATGACTGTCTACCAGGCAGTGAGACAGTTTAGCCTCCAGCCAGAGGAGGAGCGAGAGAGCACTGACGACGAGGCTAACCCACTCGGACGTGCAGGAATATGGACCAAAACGCACACTATATGgtataaGCCGGTGAGGGAGGATGAGGATGGTTGTAAAGACGCTGTTGGAGGGAAAAGGGGCAGAGCTCAGACTGCTCCCACCAAGACCTCCCCACGCAATGCAAAGAAGCAGGACGAGTTGTGGCACGATGGTGTATGTCCAAGCGTCACAAACCCGTTGGAGGCGTACCTCATATCTGATCCTCCAGAGGGAATCACTTTTGATGATCCCTCCCTGGAGGTCATTCTGCTGCTGAGGGTTCTGCACTCTATTAGCAGATACTGGTTCTACCTCTATGAAAATGCTGTGTGTAAGGAGATCATCCCCACTAGTGAGTTCATTAACAGTAAACTGACAGCGAAGGCCAACCGGCAGCTGCAGGACCCGCTCGTCATCATGACAGGAAACATCCCCACCTGGCTCACCGAACTGGGAAAGACCTGTCCGTTCTTCTTCCCGTTCGACACGCGGCAGATGCTGTTTTACGTCACTGCGTTTGACCGGGACCGAGCTATGCAGCGGCTGCTGGACACCAACCctgaaattaaccaatcagattcgCAGGATAGCCGAGTGGCCCCGCGACTTGACAGGAAGAAgAGGACGATAAACCGAGAGGAGCTGCTGAAGCAGGCGGAGTCAGTGATGCAGGACCTGGGCAGCTCCAGAGCCATGCTGGAGATTCAGTACGAAAACGAggTGGGAACGGGTCTGGGCCCAACACTGGAGTTTTATGCTTTGGTGTCTCAGGAGCTGCAGAGAGCTGATCTGGGTCTGTGGAGAGGAGAAGAGGTCACACTTGCTAACCCAAAAGGGAGTCAGGAGGGCACGAAGTACATGTTTAGTTCCAGAGGGCTGTTCGCCGTGCCGTTCGGCCGCAGCACCAAACCTGCACACATCGCCAAGATCAAAATGAAGTTCCGCTTCCTTGGGAAACTCATGGCCAAAGCCATCATGGACTTCAGACTGCTGGACCTGCCGCTGGGCCTGCCATTCTATAAGTGGATGTTGAGGCACGAGTCGTCCATCAGCTCTTTCGACCTCGTTAACATCGACCCTGGAGTGGCCAAATCTATCCAGCACCTAGAGGACATCATCAGACAGAAGAGGAGACTGGAGCAGGACCAATCACATACGAGGGAGACGCTGCAGCTCGCTCTGGAGAGTCTGAATATGAACGGCTGCTCGGTGGAGGATCTGGGACTCGACTTCACGCTGCCTGGATTCCCAAACATCGAGCTGAAGAAGGGCGGGAAGGACGTTCCTGTGACCATACACAACCTGGAGGAGTACTTGAGGttggtGGTCTACTGGACTCTAAATGAGGGAGTTTCACGGCAGTTTGAGTCGTTCAGGGAAGGATTTGAATCTGTCTTTCCCCTCCACCATCTGCAGTACTTCTACCCCGAGGAGctTGATCAGCTGCTGTGCGGCAGTAAGTCTGAGACGTGGGATGTGAAAACTCTGATGGAGTGCTGCAGACCCGACCATGGATACACACACGACAGccGGGCAGTGCGGTTCCTCTTTGAGGTCCTAAGCAGTTTTGATGCTGAGCAGCAGAGACTCTTCCTCCAGTTTGTTACTGGGAGCCCCAGACTACCGGTGGGAGGTTTCCGGAGTTTGAACCCTCCCCTGACCATCGTACGCAAAACGTTCGAGTCGACGGAGAACCCGGACGACTTTCTGCCGTCGGTGATGACGTGCGTGAACTACCTGAAGCTGCCGGATTACTCGAGCATCGAGATCATGCGCGAGAAACTGTTGATCGCAGCTCGCGAAGGACAGCAGTCCTTTCATCTGTCCTGATCGCCCGCACTCACGCAGAAATGCCTTCAGAACCCAAACCCACACACATCGCCACTTCCTCCCTTCCTCCACACTTTTCTAttgttttcctctttttcctccttttgttttttcttttttgttttgttttttaagctcCTCTGAGGCGGAGTGTAACCGCTGCCTCGCTGTTTAGGGAAAAAGCAGCTTCTGGAAATAAAAGTTGAAGAAAAGACTGACGTTCTCTTTGCTGCCCTCCTCCCTGTCCACTGAGAGCGGAGAAGAGGAGGCGCTGCGAGACTCCAGGATCTcccaaacaacagaaaaaaa

Function

symbol description
trip12 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of nitrogen compound metabolic process; and regulation of embryonic development. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleoplasm. Is expressed in myotome. Human ortholog(s) of this gene implicated in Clark-Baraitser syndrome. Orthologous to human TRIP12 (thyroid hormone receptor interactor 12).

NR:

description
E3 ubiquitin-protein ligase TRIP12 isoform X5

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679960.1 True 6951 mRNA 0.55 43 1567115 1622172

Neighbor

gene id symbol gene type direction distance location
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 109589 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 614635 927719 ~ 952480 (+)
sertad3 NA coding upstream 848410 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 854094 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 885212 678995 ~ 681903 (+)
LOC103036673 NA coding downstream 30482 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 40806 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 70426 1692598 ~ 1905714 (+)
lrch3 lrch3,LOC103027580 coding downstream 1049331 2671503 ~ 2720959 (+)
parp9 NA coding downstream 1169867 2792039 ~ 2806754 (+)
G155576 NA non-coding upstream 95693 1470141 ~ 1471422 (+)
LOC111194749 NA non-coding upstream 183471 1379727 ~ 1383644 (+)
G155581 NA non-coding upstream 184978 1381836 ~ 1382137 (+)
G155579 NA non-coding upstream 195203 1365000 ~ 1371912 (+)
G155573 polr2i,rpb9 non-coding upstream 205221 1357950 ~ 1361894 (+)
G155677 NA non-coding downstream 9693 1631865 ~ 1648626 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding downstream 21787 1643959 ~ 1650935 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 56373 1678545 ~ 1680366 (+)
G155717 NA non-coding downstream 141235 1763407 ~ 1765707 (+)
G155718 NA non-coding downstream 152269 1774441 ~ 1776874 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 288853 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 343765 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 460323 1103450 ~ 1106792 (+)
G155206 NA other upstream 1413852 149347 ~ 153263 (+)
G155776 NA other downstream 1116189 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1988846 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2307159 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2953496 4575668 ~ 4637290 (+)
G156188 NA other downstream 3534982 5157154 ~ 5157400 (+)

Expression


Co-expression Network