LOC103036673


Basic Information

Item Value
gene id LOC103036673
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1652654 ~ 1658962 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679961.1
CGCGGAAATTTTGTGACGATTCTTGATTCAGTTGGTGCATTATTATCTCGCTGTCGGTTGTGAGTTAATAATTCAGATTTAATATCCGCAGTTATCAGCCGTGTCGCTGATAACTTGCTGACAAAACGGTCAACAGAATGGCTCTTTCCAAACCTGATTCATCAGCAAGATACTGGAGGTCATCTGatcaatattttaacattaataaatgcACGTTTGGAGAACAGGCCAGAAACAAAATAGACAAAGCAAAGCGTACACAACAAAGTGATGTTATTTTGCAGTGTGTCTGCGCTCTGTTGAATTCTGGAGGTGGAGTTATCTCAGCAGGGGTTGAAAATGAGGACTACTGTTATTGTACCATGAGTCTTGGGCAGGACTTGGAGGAGCATTTGCTCAAATTACTGGATGTTCCTGAGGATTTCATTGAATTCGTTCAATCTGGtaatgcattacacatgtatgTGAAGTCTTGGTGTTCACATGATAACAGAGCAAGACTCTGTAGTGTTCACAGCGGCTTAAGGAAGAGAGCAGGGACAAAAACTCCCCTCATACACCCGAGTGGGGTTCTGGACTTTATAAAGAAGAAACGTCAGACTCTTTATTTGGGTCCTCctgcaaaaagaacaaaatggaTACATGGTGATGAGATTTACAATAAAGCTCAAGAGTTCTATGAAAAACAAGAGGCACGTCTTGGTCAGATTTTAGATTTTGGAGAAAGTGTAAATGTTGAACTTAAAAGCTTTGcccatgaaaaaaatctgaagacAAGACTTAATGAGAAAGTTCCCAAATACCTTTCAGCTTTTGGAAACACTAAAGGGGGGTTCCTATTCATCGGTGTTGATGACAGAAGCAAAACAGTCATTGGCTGTGGTCGGGGAATGGATGCCCAGATGATGGAGCAGATGATCCAGGAAATCTGTAACAGAGCACAGAGCCGGGCTTTTCATTTCCTAAACTGTGCACGAAAAGAGGAATGGTCTGTGGATTACGAAGTTTTCGAAGTTATGGAAAACAGTGGCGAGGAACCTCGATATATTGTTGCAGTAAAAGTTCAAGCCTTCTGCTGTGCTGTTTTTGAGGACGATCCAAAATGCTGGCATATTGAGAATGATACACTCACTCAGCTAGACCCAGAAAGCTGGTTGAAGAAAATGCAGGGCTGTGATCCTGGTGATCCGGATgatgatttgagcagccgtttTAACAAGGTCTTAAGTCTTAAAGACTCCCCACCTCAGTGCAGAGCTGTCTACAGCATCAAAGACATCGCAACACTCCAGGAAAGAGTGTTCTCTGttcagggGGAAAGCCTTAACATAATGTGCAAGTACATACCACAGGAGCTCCTTGTGAACTACCCAAATTTGTTAACCTGCATTCAGACAAAAAGTGGACCTGGAATTTTAATCATGTCTACCAGCTGGGCCATTGATGTGAACTTACCACGAAACAAGTCTGTCATCTGTGAAGCCCTGCTGATCAGTACAGACTGCTACCCCACACTGTTCTGCTGGGCTGAAGGAGACAGTCCAGAACTCTGGCAGTACGTTAATGACACTGCTTTCAGTCTGAAGCAGAAGTTGGTGAATCTTGGCGGATACACAGGAAGGCTTTGCGTGATCCCTCGTCTGGTTAACTGCCAGACAGGAGAAGTGATCCAGAATGAGACTGATGGTGCTCCTCCTTATCCAGACAGTTATACTTTGAACCATGTTACAGTACAGGCCTTACTACGGTCCTTAACTACAGTTGTGATGAGCATCTCTTCACCTCTGAGTGACACACTCGGCTGCGAGTTCTTCAACCTGTTAACTGAGGAGCAGTATGATATCCTTCACAAGTACAATGGCATTAAACATCTATTCATCCACGGGCCTCCTGGTTCAGGAAAGACCTTGATTGCCATGGAGAAAATACGGATGATTAAAAATTCAGACAACTGTGAGGATACGGACATCCTGTATCTCTGTGAAAATGTGGGATTACGAGACTTTGTAAGGAAGCAGTGCAAGTGCTTATGTGAGACAAGAGCCGGCTTCATGAGGAGAAATGATGACAACTTCTTCAGGGTTAAGCACATAATTGTGGATGAAGGACAAAACTTTCGCCTGGAGCATGGTGACTGGTACCAGAAGGCCAACAGCTTGGTACAGGAAAATGATGGAATTTTCTGGATCTTTGTGGACTACTTTCAGAGGAGTCACACAAGCAGTAGTGGTCTGCCACCTCTGAATTCTCAAAGTAAGGCTTTCCTCTATGAGGTTGTACGAAATTCAGAGAAGGTATTTGATGCCATGTTAGATCTAATTCACCAAATTGCTGAACATTTAAAACCTGAAGAAACTGCACACTTCCAGGATATGGTGAAGAATGTAACACTGAGCCACTCTTTCAGAGGACAGCTTATCAGACGCACTAATCTTCCATCAGTGGAGACCAACGTAGTCACAATAATCAGAAATCTCCTGAAGAGAGGGCACTCCGCCAAGGACATTGCCGTCCTCTATTCCACTTTAGAAGAGCTTGATAACAGGGTgtacagtgttaaaaaacagATGTCCTCTGTCCAGTTTGGCAGTGTAGAGAACATAGACGAGGACGTGGTTGTGCTGGACACCATTCGTAGATTTTCAGGCCTTGAAAGGAACATTGTGATTTTGGTGGACCCCTCTGTTCATCCGGTTCAGAACGAAGTTGAAGTAAATGTGCATCTCAGTGCGTTCTCCAGAGCGAGAATCAGACTGTATGTGTTGCAGTCAAAGCGTTCAAAACTGACACCTAGAATCGCTTTTTAG

Function

GO: NA

KEGG:

id description
K24459 SLFN13; schlafen family member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679961.1 True 2807 mRNA 0.44 5 1652654 1658962

Neighbor

gene id symbol gene type direction distance location
trip12 trip12,LOC107679016,LOC107710892 coding upstream 30482 1567115 ~ 1622172 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 195128 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 700174 927719 ~ 952480 (+)
sertad3 NA coding upstream 933949 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 939633 704355 ~ 713021 (+)
LOC103036983 NA coding downstream 4016 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 33636 1692598 ~ 1905714 (+)
lrch3 lrch3,LOC103027580 coding downstream 1012541 2671503 ~ 2720959 (+)
parp9 NA coding downstream 1133077 2792039 ~ 2806754 (+)
LOC103044837 NA coding downstream 1223865 2882827 ~ 2938070 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding upstream 1719 1643959 ~ 1650935 (+)
G155677 NA non-coding upstream 4028 1631865 ~ 1648626 (+)
G155669 NA non-coding upstream 55039 1597104 ~ 1597615 (+)
G155576 NA non-coding upstream 181232 1470141 ~ 1471422 (+)
LOC111194749 NA non-coding upstream 269010 1379727 ~ 1383644 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 19583 1678545 ~ 1680366 (+)
G155717 NA non-coding downstream 104445 1763407 ~ 1765707 (+)
G155718 NA non-coding downstream 115479 1774441 ~ 1776874 (+)
G155722 ddb1,LOC102208280,LOC106561926 non-coding downstream 267472 1926434 ~ 1947167 (+)
G155750 NA non-coding downstream 916118 2575080 ~ 2575382 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 374392 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 429304 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 545862 1103450 ~ 1106792 (+)
G155206 NA other upstream 1499391 149347 ~ 153263 (+)
G155776 NA other downstream 1079399 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1952056 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2270369 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2916706 4575668 ~ 4637290 (+)
G156188 NA other downstream 3498192 5157154 ~ 5157400 (+)

Expression


Co-expression Network