LOC103029469 (spon1,spon1a,LOC107741890)


Basic Information

Item Value
gene id LOC103029469
gene name spon1,spon1a,LOC107741890
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4296319 ~ 4510540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679964.1
CCCTACAGGATGGCGGCACCTCCTCCCGCTCTTCCCGCTCCTCCTGCGCGCGGCGGGCGTTAACAGCTCCTCGCCTCAGCTCGCGCTGCTCCGCTGAGTTCTGCCTGCGCGCGCACTCAACTTTGcttctgtattttttgtttatttcattttttttaaagggggaAAGGGGCGGAGCTTGAGTTCTTCCCGTGCGTGCACGCGACGCGCTCTAACCGGGAGCGCACCTGCCTCCGTCGCGTGCTCCAGTGATGTCCGCGGCTGCCGCTGCACCGGTGGCGATGCGTCCGCGTGTGCGCTCGTGTCCGCGCTCGCGCGCGCTGCTGCTTCTACTGCACGGGCTGCTCGTGGCCGGACTCCCGCGCGCCGCGCTCGCCTTCACGGAGGAGCCCGTGGAGCGCGTGGCCAAACCGGACGCCTTCTGTAGCTGGATCTTACGCGCGCAGCCGCAGGGCGCGAGGAAAGAGGGGCACAGCGAGTTCAGGCTGCGCGTGGAGGGGGATCCCGAACACTACCAGCCCGCGAGCACCTACAGAGTGACATTATACGCCACCAACCCCGCTTACTTCAGAGGCTTCACTCTCATCGCTCTGAAGGAGGGGAGGAACGGGGAGAAAGAGGAGGATTACGCCGGCAATTTCCAGATCATTGATGAAGAGGACACACAGTTCATGACTAACTGCCCGCCTGCCGTCACAGAGAGCACCCCTCGTAGAAGGACCAGGATACAGGTGTTCTGGACAGCGCCCCCATCAGGCAGTGGCTGCATACTACTGAAGGCGAGCATCGTTCAGAGGAAGATCATCTCCTTCCAGGATGAGGGTTCACTCACAAAGCGGATGTGTGAGAAAGAATCACTATATGGAGAATCCACAGATAAACCGCTGCTGGACTGCTGTGCTTGTGGAACAGCGAAGTACAGGGTCACCTTCTATGGGAACTGGTCAGAGAAGCTTCACCCCAAGGATTACCCCAGGAGAGCCAACCACTGGTCAGCCATCATCGGGTCGTCTCACTCCAAGAACTATGTGCTGTGGGAATATGGAGGTTACGCGAGTGACGGAGTTAAACAGGTGGCTGAGCTGGGTTCACCAGTGAAGATGGAGGAGGAAATTCGGCAGAAGGGTGATGAAGTATTGACGGTCATTAAGATGAAGGCCCAGTGGCCCGCCTGGCAGCCCCTGAATGTACGGGCCGCCCCTTCAGCCGAGTTCTCGGTGGACCGCTCACGGCACCTCATGTCCTTCCTGACCATGCTGGGTCCCAGCCCAGACTGGAACGTGGGGCTTctcattttttatattttgattgatTGCATAACTTTAACTAAgtctttttttccatattttttgcagTCTCCCAACAAGCCCACTGTTCCTCAGGAGAAGATCCGGCCTCTCACCAGCTTGGACCATCCTCAGAGCCCGTTTTACGATCCAGAGGGGGGTGCTATCACGCAAGTGGCCAGGGTAGTTGTGGAGAGAATCGCCCGCAAGGGTGAGCAGTGCAACATCGTGCCTGATAACGTGGATGACATAGTGGCAGACATTGCccaggaggagaaggaggaagACGACACTCCTGAGACATGCATTTACTCCAACTGGTCACCTTGGTCGGCATGCAGCTCCTCCACCTGTGAGAAGGGCAAGAGGATGAGGCAGCGGATGCTAAAGGCCCAGCTGGACCTGAGTGTTCCCTGCCCACATACCCAGGACTTTGAGCCCTGTATGGGGCCGGGCTGCAGCGATGAAGATGCTACAACCTGCATGATGTCAGAGTGGATCACCTGGTCTCCGTGCAGCGTGTCGTGTGGGCTGGGAATGCGCTCCAGGGAGCGTTATGTAAAGCAGTTTCCTGAGGATGGTTTCGCCTGCACTCTGCCCACCGAGGAAACCGAGCCCTGCACAGTCAACGAGGACTGCTCTCCGAGCAGTTGTCTGGTGACGGAGTGGGGTGAGTGGGATGCCTGCAGTGCCACCTGTGGGCTGGGAATGAAGCGTCGGGAGCGTATGGTGAAGATGCCCCCCTCTGATGGCTCCATCTGCGGGgcggaggtggtggaggtggagaaGTGCATGATGCCAGAGTGTCATACCATCCCGTGCCTGCTGTCTCCGTGGTCTGACTGGAGTGACTGCAGTGTGACATGTGGAAAGGGCACGCGAATGCGACAGCGCATCCTCAAATCCCCCGTGGAGCTGGGAGAGTGCACGGAGGAACTGGAGCAAGTGGAGAAGTGCATGCTGCCAGAGTGCCCTTCAGACTGTATGATGTCGGACTGGTCCGAGTGGTCCGAGTGTAATAAATCCTGTGGGAAGGGTCACATGATCCAACGGATGATAAAGATGGAGCCTCAGTTTGGAGGAGACCCGTGCGCCGAGACGGTCCAGAGGAAGAAGTGTAAGATCCGGAAGTGCAGCCAGGGCGGCGCCAACAGTGAGGAGAGGAAGAAACGCAAGGAAGCTCGCAAGAAGAGGAAGAACAAGCAGGGCAGGGAGGAGGGAGGGGATGAGCTGGCAGGATGCAAAATGAAGCCGTGGTCTGGATGGACGGACTGCACCAAGTTATGTGGCGGAGGAATCCAGGAGAGGCTTATGACGGCCAAGAAGAGATTCAAGAGCACGCAGCTAAACAGCTGCAAGGACAGGAAGGAGATCCGGGCCTGCAACGTCCATCCCTGCTAGGGTTGCCGAGGCTTACGGGAAGGGACACATTTCGGCACGGGGACTGGATTTAACCGGATTTAACAGGATTTAGCGGGATTTAGCTGGATTTAACGTCCATCACTGGCTCTCAGTGGTGTGGGGCACTTTGTTTAGGGATGGCATGGTGCAACagtttttgctcatttttatgtttcttattttttattaaatagaatatagaatagTGACCCACGGTTTGTTTGGGTGATTGATTGGAGGAAGGTGCTTAGAGTCGCTGTTAAAA

Function

symbol description
spon1a Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in central nervous system; eye; and hypochord. Orthologous to human SPON1 (spondin 1).
spon1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of protein binding activity; positive regulation of protein processing; and regulation of amyloid precursor protein catabolic process. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: spondin-1

GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679964.1 True 2952 mRNA 0.57 18 4296319 4510540

Neighbor

gene id symbol gene type direction distance location
LOC103036857 LOC108433503,LOC108264854 coding upstream 172839 4008326 ~ 4123480 (+)
LOC103036562 hipk3 coding upstream 296857 3977752 ~ 3999462 (+)
LOC103025504 LOC108425960,LOC108266765 coding upstream 397104 3858506 ~ 3899215 (+)
ndufa10 NA coding upstream 1332768 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 1358249 2882827 ~ 2938070 (+)
LOC103037478 LOC108434021 coding downstream 167663 4678203 ~ 4738405 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding downstream 405688 4916228 ~ 4920871 (+)
LOC103036856 LOC103036856 coding downstream 1011146 5521686 ~ 5524043 (+)
cdyl2 cdyl2 coding downstream 1026194 5536734 ~ 5597788 (+)
cenpn cenpn coding downstream 1102421 5612961 ~ 5619291 (+)
G156066 NA non-coding upstream 26611 4269505 ~ 4269708 (+)
G156062 NA non-coding upstream 48280 4247822 ~ 4248039 (+)
G156060 NA non-coding upstream 50798 4245251 ~ 4245521 (+)
G156050 NA non-coding upstream 107530 4188506 ~ 4188789 (+)
G156009 NA non-coding upstream 290327 3960894 ~ 4005992 (+)
G156095 NA non-coding downstream 2280 4512820 ~ 4513705 (+)
G156107 NA non-coding downstream 39700 4550240 ~ 4550867 (+)
G156121 NA non-coding downstream 137088 4647628 ~ 4648023 (+)
G156151 NA non-coding downstream 357550 4868090 ~ 4868355 (+)
G156153 NA non-coding downstream 378056 4888596 ~ 4889001 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 364156 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 681828 3611018 ~ 3614491 (+)
G155776 NA other upstream 1541207 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 3018057 1187146 ~ 1278262 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 65128 4575668 ~ 4637290 (+)
G156188 NA other downstream 646614 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 2582967 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 2861836 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 3090027 7600567 ~ 7606668 (+)

Expression


Co-expression Network