LOC103037478 (LOC108434021)


Basic Information

Item Value
gene id LOC103037478
gene name LOC108434021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4678203 ~ 4738405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679967.1
AGCGAGCGAGGTAGCTCATCACCATGGCTTCAGATGCCAGTTCCATGCTGGAGGCAGCCTTGGAGCAAATGGATGATATTATAGCTGGCTCTAAGGCTGTGGTACCAGTGGATGAAGCGAGTCGTGCTCTGGTCCCGGTGGCCCCTGTGCAGTTCTGCCCCTCGGTGAAGGTTCTGCAGTTGGCTGAGGAGCTGAAAGGAGCTTTGGAGGGTCAGGAGGATAAGGAGGCTCTGAGGAGACAAGTTCCCTCCACCACAGCACACACTCTACTGCTGTGGCTGGACAAAAGCCTGGTCAACCTGCGGGCACTCGGAAACAATGAGAGCTATCAGGAACGTCTGTCTCGTCTAGAGGGAGATAAGGAATCTCTAGTGCTTCAGgtgagtgTGTTGACAGACCAGGTAGAAGCTCAGGGAGAGAAGATCAGAGACTTGGAGAGTTCTTTGGAGGAGCATCAGCACAAGCTCAACTCCACAGAAGAGATGCTGCAGCAGGAGCTTCTGAGCAGGACAGCCCTGGAGTCTCAGAAACTGGATCTGATAGATGAAGTTTCCTATCTGAAACTGAAGCTGGTGGGCATGGAGGAGAGACAGAACCACAACGTGGAGAGACAACACAAAGCTGAGagCGTAGTGAATCTGATTAGCGAGCTGCAGGAGCAGATGTGTAGGATTCAGCAAGAGCTCTCTTGTAAGATCCAGGAGAAAAAGGCTGCAGAGAGCCGGGAGGTGGACCCTGAACAGGGAGGAGACAGTAGCCCACCTGAAGTTCCTGAGAAAGAGTCAGAGCAGGCTGGGGACAGGCCTGTGGTGGCACAGGGGCATGGAGGTTTAGCTGAGGAGCTGTGTCGCTGTGGAAGAGAAAGCGGTTTGTTCCAGGAGTTGAGACTGCTGAAAAACAAAGTTGACGAGCTCGAAGATGAGAAGTCGCAGTATGAGCGGAAGCTTAAAGCCACAAAGcTGTCTATCTCTTACTCTCTGCATGTGTGTTACCAGTCTCTGGTCACTCAGTTGTCTAGTCTGAGGTTGACGGTGGAGCAGCTACAGGTGGAGAGGCAGCAGTGGGAGGAGCGCAGCAGGAACCTGCAGGCAGAGATCTCAACCcttcagcagcttctgcagTGTAAGAACGCAGAGATCGAGAGTCTTCAGGCCCAGCTGCTCTCCAGAGCCCCTGTGTCTGTGGACAGTGCAGAGAGAGAGGAGATATACCGGAGGAGGCTTAACTCTAAACATCAGGAGTTACAGAAGTTAAAGACAGGGATGGAATTACTGATAGCAGACAACAGTGAAAAGGATCGGCGTATAGAAGAACTGTCCCTCCTCCTGAGCCAGTGCAGACAGTTCAGAGACGGCATAAGCCTAGTTCCTTCGCTACAAGGCAGCtgtgaggaagaggagcagAATGGAGGAGTGAAGATGAAGGCTCTCACTCTTAAGCCTCACTCTGAGttgACCTCCAGTGCTTCATCTCCACTTCTTGCGTCTTCAGTGTCCAACCAGAGGGAAGCTGAATCCAGGTTACATAAGAAACATCTGTCCTGCAGTATGGAGGACTTGAAAGGTGGAGCAACACAAAAGATTCCTGAAGAATCTGTTTCTTCCAATGAGTCTGTGTatcctctgctctctctctcttttcctccatGCTTTCTAAACTCCGGGCTTTGGCTTGAAGGTCGCTGCAGGAGTGCGAGCGCTCCGGTTTTAGGAAAGACAGAGAGGATGGAGGACACGAGCATGTCTGATCTTTCGCCAGTGTCTTCTGGAGTGGATTCTGGACAGCAGTCTCCCGTCTCCCAGGAAAACATGAAGAACAAGAAGAGTATTCGCAAACTGTGGGGAAAaatcAGAAGAACCCAATCAGGGGGTCTGCAGGGAGATGACCTAGAGCCCACTGAATTCAGAAGAGGGGGCTTCAGAGCTACAGCTGGACCCAGGCTGGCCCGGACGCCGGACTCAGGTCGTTCAGTTCGAGACATGTCACTGCCCTTCTCTAAGTGGACCACAGAGCAGGTGTGTGGTTGGCTGGAGGACTATGGACTAGGCCAGTATGTTAACCTCACCCGTCAGTGGGTGATCAGCGGTCAGACCCTACTTTCCGCCACACCACAAGAGTTTGAGAAGGAGATGGCCATTAAACACCCCCTGCACAGAAAGAAGCTACAGCTGGCGCTCAGGTCATTTAGCAACAAGGCAATGGAGAAATCCTCAGAGCTGGATCACATCTGGGTTACACGGTGGTTGGATGACATTGGCTTACCCCAGTACAAAGACCAGTTCCATGAGAGCAGAGTTGACGGCAGAATGCTCCAGTATCTGACGGTGAATGACCTTCTGTTCCTGAAAGTCACCAGTCAGCTCCATCATCTCAGCATCAAATGTGCCATCCACGTGCTCCACGCCAACAAGTTCAACCCGTCCTGCCTGAGACGGAGACCGGGGGACGAGaatAAAACATCTCCATCAGAGGTGGTGCAGTGGTCTAACCATCGGGTAATGGAGTGGTTGCGCTCTGTGGACCTGGCTGAGTATGCTCCAAACCTCAGAGGCAGTGGAGTCCACGGAGGCCTTATAATTTTGGAGCCTCGCTTCAACTCTGAGACCTTGGCCATGTTGCTTAACATCCCTCCTCAGAAGACTCTACTGAGGCGGCATTTAGCCACCAACTTCAACAGTCTGGTGGGACTACAGGCCCAGCAAGAGAAACGAGAGTATGCTAATGCTAGCGGACACACGCCCCTCACTACCACTGCCAAAGTCCGGCCAAAGAAGCTCGGCTTCACCAACTTCAGCCACTTAAGGAAGAGAAGACCCGACGATTCAGCAGACTACATCTGCCCAGTAGATGGAGGTATTTCACCAATTTTGAACGGTATCTCTCACCGGCCCCAAGGAAGCTTCAGGGGCTTGAGCCCCATCGTGGACAGAGACACAGATAGACTGGATCAGGTTGTCTCAAAGAGCTGATCTTTTTCCTTTTGAACTCTTAATAAGCAGAACCAGTGAGCAGAACTGAACCTTCCTCTACGCTAAGTTCCTCTACGCTTGCTCTACCCTTCACCCCCACTGCAATGGACAGCTCCACAGAAACCCCGGCCAGTAGCGCTTGATAAATAATGAAGAGGATTCTAAACTGATCCATCTGGACATGATTTAGATGCTTTTGAGGATCATGTGAACTTCTTACAAGTGAAGAAACTTGTCATTGtaattactgtaactgtaactgtactgtaattgGCATGCTGACTTGAGACCTGAATGgtttaataaagttaaaatgaagtaaaattgtGAATCAGCAATGCTAaatgataatgctaatgctccctTGTATGATTATAAGCATTAAACGTTCAATCATT

Function

NR:

description
PREDICTED: liprin-beta-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679967.1 True 3367 mRNA 0.51 26 4678203 4738405

Neighbor

gene id symbol gene type direction distance location
LOC103029469 spon1,spon1a,LOC107741890 coding upstream 167663 4296319 ~ 4510540 (+)
LOC103036857 LOC108433503,LOC108264854 coding upstream 554723 4008326 ~ 4123480 (+)
LOC103036562 hipk3 coding upstream 678741 3977752 ~ 3999462 (+)
LOC103025504 LOC108425960,LOC108266765 coding upstream 778988 3858506 ~ 3899215 (+)
ndufa10 NA coding upstream 1714652 2942774 ~ 2963551 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding downstream 177823 4916228 ~ 4920871 (+)
LOC103036856 LOC103036856 coding downstream 783281 5521686 ~ 5524043 (+)
cdyl2 cdyl2 coding downstream 798329 5536734 ~ 5597788 (+)
cenpn cenpn coding downstream 874556 5612961 ~ 5619291 (+)
atmin atmin coding downstream 882815 5621220 ~ 5630190 (+)
G156121 NA non-coding upstream 30180 4647628 ~ 4648023 (+)
G156107 NA non-coding upstream 127336 4550240 ~ 4550867 (+)
G156095 NA non-coding upstream 164498 4512820 ~ 4513705 (+)
G156096 NA non-coding upstream 193562 4484390 ~ 4484641 (+)
G156080 NA non-coding upstream 308098 4369730 ~ 4370105 (+)
G156151 NA non-coding downstream 129685 4868090 ~ 4868355 (+)
G156153 NA non-coding downstream 150191 4888596 ~ 4889001 (+)
G156157 NA non-coding downstream 214669 4953074 ~ 4953274 (+)
G156165 NA non-coding downstream 273421 5011826 ~ 5012075 (+)
G156184 NA non-coding downstream 382599 5121004 ~ 5121206 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 40913 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 746040 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 1063712 3611018 ~ 3614491 (+)
G155776 NA other upstream 1923091 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 3399941 1187146 ~ 1278262 (+)
G156188 NA other downstream 418749 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 2355102 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 2633971 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 2862162 7600567 ~ 7606668 (+)
G157055 NA other downstream 3831525 8569930 ~ 8570877 (+)

Expression


Co-expression Network