LOC111194834


Basic Information

Item Value
gene id LOC111194834
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16236180 ~ 16236963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679976.1
ACAGAGCCTCTGTACTGCGTTGCTACAATTGTTGACCCAAGATACAAAGATCGCTATTTTGCCGCAGAAGTGAAACTACAGGCACACGAAATGCTCCAAACCGAGATGGAGAAAGCATCAAGTGAGCGCTCAGAGCAAACAAGTGAGCTACAAGACCGCCCACGAGAAAAAAGAGCCAGGACGGATGACCAAGCGACGTGCTCCCTCTTGGATATGTACGATGAAATTCTGGAAGAAACGCTGACCCCTCAGGAAAACACCCAGACAACAACTGAGGTGCAGGGATTCCTGTCAGAAGCTCCAGTAGCAAGGACAGAAAGCCCACTGCAGTACTGGAATAACAACAAAAGTCGATTCCCTACTATTGCCAAAGTAGCAAAGAAGTTCCTGTCTGCTCCATCCACTAGTGTTGACAGCGAGAGGTTATTTAGTGCAACTAGCAATGTGATCAATGAAAAGAGGAACAGAATTGCATGTGATAAAGCAGAGATGCTCCTCTTAGTGAAGAAAAACCTTCCTCTCCTTCTGAAAAATACAGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679976.1 True 543 mRNA 0.46 2 16236180 16236963

Neighbor

gene id symbol gene type direction distance location
LOC103038143 NA coding upstream 268090 15960149 ~ 15968090 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 276774 15947586 ~ 15959406 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding upstream 303714 15878898 ~ 15932466 (+)
nlrc5 NA coding upstream 360945 15851856 ~ 15875235 (+)
cetp cetp coding upstream 389490 15833153 ~ 15846690 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding downstream 37716 16274679 ~ 16285044 (+)
LOC107197482 LOC102776007 coding downstream 269933 16506896 ~ 16511309 (+)
n4bp1 NA coding downstream 275371 16512334 ~ 16530595 (+)
trnal-cag_11 NA coding downstream 526563 16763526 ~ 16763608 (+)
pllp pllp coding downstream 527069 16764032 ~ 16773000 (+)
LOC111194770 NA non-coding upstream 249432 15969286 ~ 15986748 (+)
G158652 NA non-coding upstream 256811 15979026 ~ 15979369 (+)
G158651 NA non-coding upstream 257234 15976852 ~ 15978946 (+)
G158644 fam192a non-coding upstream 293918 15936078 ~ 15942262 (+)
G158641 NA non-coding upstream 326889 15909003 ~ 15909291 (+)
G158776 NA non-coding downstream 53813 16290776 ~ 16291007 (+)
G158786 lonp2 non-coding downstream 337721 16574684 ~ 16575374 (+)
G158793 NA non-coding downstream 350964 16587927 ~ 16588472 (+)
G158823 aars non-coding downstream 491493 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 501509 16738472 ~ 16738877 (+)
LOC103041352 NA other upstream 460014 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 464235 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 467519 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 920628 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 1098910 15128368 ~ 15137270 (+)
G158779 NA other downstream 142296 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 305915 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 417173 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 542543 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 864649 17101612 ~ 17172228 (+)

Expression


Co-expression Network