LOC111194835


Basic Information

Item Value
gene id LOC111194835
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22090563 ~ 22094253 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679980.1
ATGCATGCACAGGCAGgaccTGCTGATCCACCCAACCTCACCTCCCTCAGCTTCAGCGGGGCGGTTCAGATCCAGCTGGATGTTCTGCAGGAAACCCGGCACATCTTCCTCCACAGTAAGAGTCTGGAGATCTCCAGAGCTCTGCTCTTAGGATCCAGATATCAGCATCTTCTCCAGGTCCAGGAGTCTGAAGCGTTCGAGCAAATCGCACTGTCCTACGAGAACTTCACGTTCAGTACGGGGCTGTACGTGATCCGGCTGGAGTTCTCAGCCAACCTGTCGGAAAGTTTTCACGGCTTTTATAAAGGAACGTACAGAACGAGCAGCGGAGAAGTCAGGACTTTGGCCTCCACCCAGTTTGAGGCGACTCACGCTCGATCTGCTTTCCCCTGCTTTGATGAACCAGCTTTCAAAGCCAACTTCTCCATCCGCGTTCGCCGAGAGCCACGGCACATCTCTATATCCAACATGCCGAAGTCTCGACTGTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679980.1 True 489 mRNA 0.54 4 22090563 22094253

Neighbor

gene id symbol gene type direction distance location
LOC103026427 NA coding upstream 6064 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 10805 22077478 ~ 22079758 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 28753 22000660 ~ 22061810 (+)
LOC103031832 NA coding upstream 390842 21631760 ~ 21699721 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding upstream 629184 21457356 ~ 21461379 (+)
LOC103027502 NA coding downstream 110904 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 140039 22234292 ~ 22260071 (+)
snrpa snrpa coding downstream 188441 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 208101 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 628467 22722720 ~ 22727446 (+)
G159904 NA non-coding upstream 171569 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 240022 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 337564 21752505 ~ 21752999 (+)
G159868 NA non-coding upstream 581730 21508595 ~ 21508833 (+)
G159864 NA non-coding upstream 598812 21491389 ~ 21491751 (+)
G159919 NA non-coding downstream 13822 22108075 ~ 22109190 (+)
G159925 NA non-coding downstream 32291 22126544 ~ 22127679 (+)
G159936 NA non-coding downstream 71668 22165921 ~ 22166376 (+)
G159939 NA non-coding downstream 83951 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 178444 22272697 ~ 22276949 (+)
fam174b NA other upstream 1015990 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1078769 21009302 ~ 21011794 (+)
G159728 NA other upstream 1353514 20736598 ~ 20737049 (+)
G159666 NA other upstream 1903644 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3514126 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 53591 22147844 ~ 22152785 (+)
G160134 NA other downstream 759159 22853412 ~ 22854081 (+)
G160306 NA other downstream 2024876 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4229567 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4523009 26617262 ~ 26755313 (+)

Expression


Co-expression Network