dhx36 (dhx36)


Basic Information

Item Value
gene id dhx36
gene name dhx36
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28300719 ~ 28386417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679985.1
ggaggaggaagaggaggagggggtCGAGGAAAGCACCCGGCTCACCTGAAGGGCAGGGAGATAGGACTGTGGTATGCCAAATGGGGAGGAATCAAGAGAAGCGAGGCAGAAAGAAAATCGAGGGCTGTAGTTCAGATGGATGAGTCCAGGGAGCAGCACATCACAAAGCTGCTGAATTCAGTTCAGAGAGGACCTCCTCAAGAAGCCCACCCCTCTAATTCTCAGTTTCAGCAAGTGAAGGAGGAGCCCAGTGGCCACAGTTACTTTGATGGGGATGATCCTCCAGaacagcaggagcagcagaCCTTCAAAGTGCCAAAAATTGAGCCAAAGGAGGAGGTGAGGATGCGTGTGAAAGAGGAACCAGGAGCCAAAGATCTAGAATACTTATTTCAAGATGTTGTCCGGAAGCCCACGCTGGACGCTGAGCTGCAGAGTGATTtggagaataaaagagagaattcTAAATACCTGGATATGCTGAAATTCAGAGAGAAGCTGCCCTCGTACAGCATGAGAGAGGAGCTGGTAGAGCTGATAGAGGCGAACCGTGTGGTCGTGGTCAGTGGTGAAACTGGCTGTGGCAAAACCACGCAGGTCACACAGTTTATCCTAGACGACTACATTCAGCGCGGAGTGGGCTCCCTATGCAGGGTGGTCTGCACCCAGCCGAGACGCATCAGTGCCATATCTgtggcgGAGAGGGTCGCAGCAGAGAGGGCGGAGGCTGTCGGAGAGGGGAAGTCCTGTGGGTATCAGATTCGTCTGCAGAGCCGGTTACCACGGAAACAAGGCTCGGTGTTGTATTGTACGACTGGAATTATTCTTCAGTGGCTGCGCTCTGATCCgtgtttgtcCAGCGTCAGTCATCTGGTTCTGGATGAGATCCATGAGCGGAGTCTGCAGTCTGATGTTCTCCTGGTCATTGTTAAGGACCTGCTGAAGTCCAGGGATGACCTGAAGGTGGTGCTCATGAGCGCCACTCTCAACGCTGATAAATTCAGCAAGTACTTTGGCAACTGCCCTATGATCCACATTCCAGGCTACACCTATCCAGTCCAAGAGTACCTGCTGGAGGATGTTATAGAGATGGTCAGGTTCAGACCACCGCATCAGCAGGACCACCGGCCCCGGTTCCGGAGGGGCTTCATGCAGGGTCACAACATGTGGCCTGAGAAGGAGCAGAAAGAGGCGGAGTATAAAGAGAGCTGGCCCTGCTACGCCCGCACACTCAGAGACAGGTTCTCAGACAGTACCATCAACGCCCTGGAGATGATGGACGAGGATGACAAGATCAATCTGGACCTGATTGTAGCTCTCATCCGCCACATCGTGCTGAACGAAGacGATGGAGCAATCTTGGTGTTTTTGCCTGGCTGGGACAACATCAGCGGCCTGAATGACCTGCTCATGGCCGAGCAGATGTTTAAATCTGACAAGTTCATCATCATTCCACTGCACTCTCTGATGCCCACCGTCAGCCAGACACAGGTTTTTAAAAGACCCCCTCCTGGAGTCCGAAAGATTGTGATCGCCACAAACATCGCAGAAACaagTATTACTATAGATGATGTGGTCTACGTGATTGATGGGGGGAAGATTAAAGAGACGCACTTTGACACCCAGAACAACATCAGCACGATGACTGCCGAGTGGGTGAGCTTAGCCAATGCCAAGCAGAGGAAGGGACGTGCTGGAAGAGTGTCTCCAGGTAAGTGCTATCACCTGTATAATGGTCTGAGGGTGAGTCTGCTGGACAGCTATCAGCTCCCTGAGATCCAGCGCACTCCATTGGAGGAGCTCTGCCTGCAGATAAAGatTCTGAAGTTGGGCCCTATTGCGTCTTTTCTGAGGAAGGCTCTGGACCCTCCGTCAGACAGAGCCATCGAGCTGGCCATCACTCACCTAATGgacctgaatgCACTGGACCAAAATGAGGAGCTGACTCCGTTGGGCTTCCATCTGGCCCGGCTGCCTGTGGAGCCTCACATTGGGAAAATGATTCTGTTCGGCGCTCTGCTCACCTGCCTGGACCCCGTGCTCACCATCGCAGCCAGTCTGAGCTTTAAAGACCCCTTCTTCATACCCCTGGGTAAAGAGAAGATAGCAGACCAGCGGAGAAAAATCCTGTCCAAAAACTCCAAGAGTGATCATCTCACCATAGTCAACGCCTTCACGGGCTGGGAGGAAGCTAAGAGGCGGGGCTACAGGTGTGAGCGAGAATACTGCTGGGACAACTTCCTGTCCTCCAACACTTTGCAGATGCTGCAGAATATGAAAGGACAGTTTGCAGAGCATCTGCTGGCGGCTGGTTTTGTGAGCAGTAAAGACCCTAAAGATCCCAGATCCAACATCAACTCTGataacGAGAAGCTTCTTAAGGCTGTCATCGTGGCTGGCCTTTACCCCAAAGTGGCCAAGATCCGCCCCAGCCTGACTAAGAGGAGGCCGatgCCAGTGAAGGTGTATACTAAGTCTGATGGGAAGGTTTGTATCCATCCTAAATCTGTCAACGCTGAGGAGTCTCAGTTCCACTATACCTGGCTCATTTATCACCTGAAGATGAGAACCAGCAgtATCTTCCTGTATGATTGCACAGAGGTGTCTCCCTTCTCTTTGCTCTTCTTCGGAGGTGACATCTCCATCCAGAGGGATAAGGATCAGGAGACCATCGCTGTTGATGAGTGGATTGTCTTCCAATCCCCAGCTCGCATCGCTCACCTGGTGAAGAATCTGAAGAAGGAACTGGacctgctgctggaggagaagaTCAAGCAGCCGTGCCCGGTGGACTGGAGCGACCGCAGCTCTAAAGACTGCGCTGTGATTTCAGCCATCGTCGACCTCATCACCACCCAGGAGAACACTGCAACACCGTACTCACCAGAACAGAGCAGGAAAATTCCTCAGCACTGGGACGAATGATCCTGCAGAGCTGAGCTGCACATTAATCAGCACGAGGGCTGACGCACTGTATCATCTGTTAAAGTGCATTAAAGGTGCAATAAGCAGAATTCTCTAcagcaacaaaaacaaactatttttgtttggaaattGATTTCATTGCAGTCGTACAGTACcactcaaaatgtttttttctttatttctgtatttaattaattttctaggGCACATACAGAATTACATGGtaaacagttaaataaaaaatgggattgtcctccacaatccactaatctaaacctgatgaacttaGATGATGATttgggaggagctggagcttcaagatgctgagaaaactattccaggtgactcttcctcattgAGACACTGAGataaaaataccaagagtgtgcagatctgtcctcaaagataaatgttttacttagaaggatctaaagtataaaacatattctgatactGTATTTGTTATCTGTTCTACATTTAAACCAAACAATATCAGTTTAACCTGGGTTGACTGTTTcactctgttttgttttgtatgtcctgtaaaataaatataaaataaataaaataaaaaataaaata

Function

symbol description
dhx36 Predicted to enable DNA helicase activity and G-quadruplex RNA binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human DHX36 (DEAH-box helicase 36).

NR:

description
ATP-dependent RNA helicase DHX36

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679985.1 True 3507 mRNA 0.49 25 28300719 28386417

Neighbor

gene id symbol gene type direction distance location
gpr149 gpr149 coding upstream 17401 28255972 ~ 28283318 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding upstream 105005 28185750 ~ 28195714 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding upstream 115812 28180682 ~ 28184907 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding upstream 122733 28173610 ~ 28177986 (+)
LOC103045576 LOC108437981,LOC108264123 coding upstream 222987 28071491 ~ 28077732 (+)
arid3b LOC108439030,LOC108264089 coding downstream 382189 28768606 ~ 28859096 (+)
LOC103037946 LOC108439022 coding downstream 568300 28954717 ~ 28969395 (+)
LOC103022881 LOC108439021 coding downstream 631643 29018060 ~ 29063139 (+)
LOC103023184 NA coding downstream 747211 29133628 ~ 29143190 (+)
LOC103038575 LOC108439020 coding downstream 765879 29152296 ~ 29159185 (+)
LOC111194734 NA non-coding upstream 265524 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 407242 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 517530 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 673297 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 713949 27586529 ~ 27586770 (+)
LOC111194802 NA non-coding downstream 256904 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 266135 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 281756 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 500025 28886442 ~ 28886800 (+)
G161312 NA non-coding downstream 500555 28886972 ~ 28889126 (+)
c18h3orf33 NA other upstream 504215 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1181455 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1393092 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1545406 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1955037 26323820 ~ 26345682 (+)
G161292 rap2b,LOC107757383 other downstream 235711 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 359279 28745696 ~ 28759007 (+)
G161331 NA other downstream 684403 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1967269 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2468141 30854558 ~ 30894506 (+)

Expression


Co-expression Network