LOC111194841


Basic Information

Item Value
gene id LOC111194841
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29603735 ~ 29604672 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679986.1
ATGGAGGTCCCCAACTCAACCACATTCCCAACCCTGGTCCCCAACTCAACCACATTCCTAACCCTGGTCCCCAACTCAACCACATTCCTAACCCTGGTCCCCACTCACCCAGGTCCCCACTCGCCCAGGTCCCCATTCACCCAAGTCCCCAACTCAAACACATTCCCAAACCTGGTCCCCAACTCAACCACATTCCTAACCCTGGTCCCCACTCACCCAGGTCCCCAGCCCTGGTCCCCACTCACCCAGGTCCCCAGCCCTGGTCCCCACTCACCCAGGTCCCCAGCCCTGGTCCCCAATCACCCAAGTCCCCAACTCCACCACATTCCCAAACCTGGTCCCCAACTCCACCACATTCCCAAACCTGGTCCCCAACTCCACCACATTCCCAAACCTGGTCCCCAACTCAACCACATTCCCAACCCTGGTCCCCACTCACCCAGGTCCCCAGCCCTGGTCCCCAATCACCCAAGTCCCCAACTCAACCACATTCCCAACCCTGGTCCCCAACTCAACCACATTCCCAACCCTGGTCCCCACTCACCCAGGTCCCCAGCCCTGGTCCCCACTCACCCAGGACCCCATTCACCCAAGTCCCCAACTCAAACACATTCCCAACCCTGGTCCCTACTCACCCAGGTCCCCAAATCTGGTACCCACTCACCCAGGTCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679986.1 True 675 mRNA 0.60 2 29603735 29604672

Neighbor

gene id symbol gene type direction distance location
larp6 larp6,LOC103354325 coding downstream 89658 29502115 ~ 29514077 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 156774 29411163 ~ 29446961 (-)
p2ry1 p2ry1 coding downstream 896590 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 978955 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 1121515 28393281 ~ 28482220 (-)
LOC111194843 NA coding upstream 156996 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 172502 29777174 ~ 29783407 (-)
LOC111194845 NA coding upstream 212359 29817031 ~ 29818532 (-)
LOC111194846 NA coding upstream 234581 29839253 ~ 29847639 (-)
LOC111194847 NA coding upstream 249637 29854309 ~ 29857547 (-)
G161547 NA non-coding downstream 104408 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 135434 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 209222 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 390654 29211476 ~ 29213081 (-)
G161411 NA non-coding downstream 406058 29197247 ~ 29197677 (-)
LOC111194805 NA non-coding upstream 16387 29621059 ~ 29625291 (-)
G161588 NA non-coding upstream 208930 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 370682 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 395074 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 422339 30027011 ~ 30132134 (-)
LOC103037190 NA other downstream 662348 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 950788 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2024817 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2484482 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3258026 26342351 ~ 26345709 (-)
G161711 NA other upstream 710934 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1094498 30699170 ~ 30781708 (-)
tap1 NA other upstream 3047296 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4493256 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4795991 34400663 ~ 34731072 (-)

Expression


Co-expression Network