LOC111194842


Basic Information

Item Value
gene id LOC111194842
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29741061 ~ 29743027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679987.1
ATGTTTGTGTTCTGCAGGAGTGGTGATCGTTTTATTGAGGAGAAAACTCTTCTACTGGCTGTTCGCTCCTACGTCTTTTTCTCGCAGCTGAGCGCCTGGCTCAGCGCCTCTCACGGCATCGTCCCCAGAAACATCCTCTACAGgGCTTGTTCATCACCTATTTCCACTCTTCCCATTTTCAGAATAAGCGCAGCTGATGAAGAACTGATATGGAACTTCTCCCAGACCCCTTCTGAGCATGCCTTCCCCGTACCCAATGTGTCCCACAGTGTGGCTCTTAAGGTGCGGGTCCAGTCACTGCCCCGCCAGCCCAAATACCCCGTTCTTAAATGCAGCATCCACTCTGGCCTGACCTTCTTGGGGAAGCGAACCTTCGACCCCGGTGATGCAGCATACCGTCGACTCGAGCCGGTCGGAGACCCTCCGAACCCTCTCCGTCTACAGGGATCCCCTCTGTTCTGCAGATCTCTACATTCCCCACTGCCTACCCAATGCAACAGTAACACCCCTCTTAATCCTCAGAAAAGCAGCAGCCCCCTGAACCCCCGCAAATGCCCCCAGCGCCCAGAGTCGTCCGTCCCACCCAACAAAGCTGTAAAGTGGCTGTATTCTCGACCCAGCAATGGCTTGGGTGTGCCGCCGTCATCCGAAGTCTACAGCTCCTGCACTAATGGGGCGGAAAGCCTGGCAAAGACAGAATCGTCTCCCATACGCGGATTCAAATCTCTCTCGCTCATTGATCCCTCTGGCTCTCCTAGCTCAAGCCCCCGCCCCACTTCAGGGGGTGAAACCAACCCTCTGATTGGTTCCCTGCTTCAGGAAAGACAAGAAGTCATTGCCCGCATTGCTCAGAGGCTTAACTTCTGCGATCTTACAGCGCCGCACCTGCCAGACGCTCTTTTCTCAGCACCTTGCGATCCGTTGGCACCTAAAACACCCTGGAACTCTTCTACCAGGGATGAGGGGCTGTTCAAAAAGACCAAAGACCCAAGTATCCCTTGCCCAATCCCACAGACACATGAAAGAACTGGTCCAGAGGACCCCGAGCACCTAGAGCCCCCAGGCTACCCAGAGAGGAGCCGGACTTCTCTCTTATGCACTCCGCTCAGCCCCAGGAGCCGAGCAAGGGCGGACCAGGCCGACTCTGCAGAGTCCGGGACCTCCGGGGCCAAACCCACAACCTGCCGGAGGCTGCTGTTGACTGATCCGAAGGAAGGGTCTTTGATAGCAGAAGCCGTGCAGGATATTTCACGTCTAATCCAGGAGAGGCTCCAACAATCCCAAGAGCTCCTGCACTCTACCTACAAGCTGTGCCGTGAGCCATCGACCACCAAACCTTCCACAAACAACCAGAACCAAGGCCAGAACCTCCAGAGTCACCAAAAACAGAACAGCCAGAAGCAGAACTATCAGCTAAGTGGCAGCAACACTGGCTGTGCTAGCCAAGCTAATGGCATCAACTTCCCACCCCATCCCAAATCCACCACAGATGTTTCCAATGGCGACTTGAGCACAGACCCTTACATTTGCACAGATGCCAGAAGAAGGAGTGATTCTAGGTCTTCGAGTGCTGCCTGCTCCAAACCTGAAGAGCCTATCATTGTTAAAGCAAGAACGCTAATGCAGACCAGTCACCAACATGCACACAATGCCAAAAATGAGCCCTGGAACTCTTTCATCAACACCACCAGCCCCAAGACCTCCCGTAGGTTCAATGGGGCGATCCGGGCTGAAGACTTCTGCGAGCCCCAGAGCAGACAGGAGGAAATGTGtgggagaagaggagagaagcaTAGCCAAGCCAAGTCCACCATGTGTGGGCAAAATGAAAATCAGGACCCctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679987.1 True 1845 mRNA 0.55 2 29741061 29743027

Neighbor

gene id symbol gene type direction distance location
LOC111194806 NA coding upstream 6389 29729350 ~ 29734672 (+)
thsd4 thsd4 coding upstream 25459 29606057 ~ 29715602 (+)
lrrc49 lrrc49 coding upstream 142154 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 255047 29476685 ~ 29486014 (+)
LOC103023825 tarsl2,LOC108413626 coding upstream 267380 29449150 ~ 29473681 (+)
LOC107196975 NA coding downstream 132747 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 146866 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 158289 29901316 ~ 30027748 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 293384 30036411 ~ 30088710 (+)
LOC103035823 bcl2l10 coding downstream 347272 30090299 ~ 30102977 (+)
G161511 NA non-coding upstream 16940 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 83573 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 94156 29625023 ~ 29646905 (+)
G161502 NA non-coding upstream 101435 29620397 ~ 29639626 (+)
G161484 NA non-coding upstream 208815 29502120 ~ 29532246 (+)
G161532 NA non-coding downstream 70594 29813621 ~ 29816600 (+)
LOC111194812 NA non-coding downstream 127883 29870910 ~ 29874312 (+)
G161599 NA non-coding downstream 222274 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 287896 30030923 ~ 30033401 (+)
G161612 NA non-coding downstream 324989 30068016 ~ 30127142 (+)
G161331 NA other upstream 624266 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 982054 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1116276 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1944557 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2621797 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 610659 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1111531 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1132011 30875038 ~ 30878327 (+)
efhb NA other downstream 1841719 31584746 ~ 31605490 (+)
G162017 NA other downstream 2325835 32068862 ~ 32148190 (+)

Expression


Co-expression Network