LOC111194844


Basic Information

Item Value
gene id LOC111194844
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29777174 ~ 29783407 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679989.1
ATGAGACGtattttcatcatcatcatcatcatcctcgcTACGCTTACAGCTCCAGGAATGAGCATGGATGAGattgtttTGGATGATTATCCAGACTCTGTTGATGATCCATTTGATGGATGCAAAGAAGACATGCGTAAACTAATTAAGACAAAATACCTGGACAAAGagttaaacaataataaaaaatttagTAAATTTAGAAAAGATTGGGAAGAAGACAAATCTCATCCCAAGTTAGAAGGGAAATTTGATGAGGGGTTGAGAAAAATAGCTCTGTTTGAATACACTGGATCTCTTTACAAGAATCTGAACACTAAAATGCGTACTGGTAGGAAAGACTACAAGACCACGTTTGGCCGGATTTCTTTACACTTTTTGATAACGGATGGCATTCAACACCTTAACCCTGATAACAAATGCCAAACCACTTACCGTTTCTGCAGAgacaaatatgtaataaaagGTGATAAAATAAGATTTGGTGGTTTTACATCTTCTTCACTTAACTCCAAACTGGACACATTTGGTAGAGAGACTTGTTTTATTATTGAGACATGCTTTGGTGCTGATATATCTGAACTGTCACACTTTAAAAAAGAGGCTGAAGTGCTGATTCCACCTTATGAAGAATTTAAAGTAGATCTTGCAGAAAAAGAGATTCCAGAAGAACTTAGCGATTGTCGTCAAGTGTATAAACTAAAGAGCACAAAGATCAAGAAGAACAACATGAACTGTGAATTgttgaaaaataagaaaatggcTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679989.1 True 769 mRNA 0.36 2 29777174 29783407

Neighbor

gene id symbol gene type direction distance location
LOC111194843 NA coding downstream 11670 29761668 ~ 29765504 (-)
LOC111194841 NA coding downstream 172502 29603735 ~ 29604672 (-)
larp6 larp6,LOC103354325 coding downstream 263097 29502115 ~ 29514077 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 330213 29411163 ~ 29446961 (-)
p2ry1 p2ry1 coding downstream 1070029 28703879 ~ 28707145 (-)
LOC111194845 NA coding upstream 33624 29817031 ~ 29818532 (-)
LOC111194846 NA coding upstream 55846 29839253 ~ 29847639 (-)
LOC111194847 NA coding upstream 70902 29854309 ~ 29857547 (-)
LOC111194848 NA coding upstream 79022 29862429 ~ 29866792 (-)
mapk6 mapk6 coding upstream 362562 30145969 ~ 30185535 (-)
LOC111194805 NA non-coding downstream 151883 29621059 ~ 29625291 (-)
G161547 NA non-coding downstream 277847 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 308873 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 382661 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 564093 29211476 ~ 29213081 (-)
G161588 NA non-coding upstream 30195 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 191947 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 216339 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 243604 30027011 ~ 30132134 (-)
G161674 NA non-coding upstream 387535 30170942 ~ 30171636 (-)
LOC103037190 NA other downstream 835787 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 1124227 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 2198256 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2657921 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3431465 26342351 ~ 26345709 (-)
G161711 NA other upstream 532199 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 915763 30699170 ~ 30781708 (-)
tap1 NA other upstream 2868561 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4314521 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4617256 34400663 ~ 34731072 (-)

Expression


Co-expression Network