LOC111194849


Basic Information

Item Value
gene id LOC111194849
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30635521 ~ 30640686 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679994.1
atggatgttgctgttcccacaaagacTGTACGCTGCTTTCCAAACAACAAACCCTGGATTACCAGCACCGTCAAAGACCTCCTCAACCAAAAGAAGAGGGCGTTCAAAGATGGAAACCTGGTAGAGCTGAAGCGCGTACAGGGGGAACTCAAGGTACATCTTAAAGAGGCCAAGGAGTCTTACAGAAATAAAGTGGAAAGAAAGCTGCAAGACAACAACATGAAGGAGGTCTGGGGTGCAATGAAAACCATCATTGGGTGCAAGAACAGCAACGGCAACCCAGTAGATGGGGGTGTGGACAGAGCAAACCAGTTTAACAACTTTTACAACAGcaccaccaccatcaccctcacttCTACCAtctccatcatcaccaccaccacaatcACTTCTACCTCTGATTACTATGATTATTATGAAGGTACATTTATAGTTAATCATTGTACTCTTAAAGACCATGAGAACCATCTCCTCTCTGCACTTTATTCCCTGTTCTTTGTGGTGGGCTTCATTGGAAATGCACTGGTGGTGTGGGTCATCACGGTGGGCACTCAGCTGAAAAGCATGACCGATGTGTGTCTTCTGAACCTGGCTCTGGCTGACCTTCTCCTGGTCCtgtctcttccttttctggccTATGAATTTAACTATGTCTGGATATTTGGTGAAGTCATGTGCTCTCTGGTTCTTGGCATCTACTTTATTGGGTTCTATGGTGGGATCTTCTTCATTGTGCTGATGAGCATCGACAGGTACTTGGCTGTGGTTCATGCCGTACTTGCCTTAAGGGTCCGAACTAAGACCCGTGGGATTGTGGCCAGCCTGGTAATCTGGCTCTTAGCTGTTGCTGCATCTTTCCCAGAGCTGTTGCACATTAGAATCATGCAGTCTACTAAGGGAGAAATGTGTTATGCATATCCAAGAGAGATGTTGGTAGCCATTGCGAGcatcaaaatgaacattgtgggtCTGCTGGTTCCACTGATCATTGTCGGGTTCTGCTATTCGATGATACTGCGGAAGCTCTACGGCTCTCactcatcaaataaacactccATGCGCCTTATTGTCATGGTCATGGTggtcttcttctgctgctggacACCATTTAACATTGCATTATTGATCAGAGGCCTGCTAATAATGGGTGTAATAcctaaaaagtgtttgtttctAAACCAGATATTGCTGACTGTAGAGATCACTGAAGCAGTGGCAGTCTCTCACAGCTGCCTGAATCCCTTCCTCTATGTGTTTGTTGGAGGGAAGTTTAGGAGGCATCTTCTCAGACTCTTCAGAGAACATCGGTCTAACTGTTGTAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679994.1 True 1326 mRNA 0.46 3 30635521 30640686

Neighbor

gene id symbol gene type direction distance location
mapk6 mapk6 coding downstream 449986 30145969 ~ 30185535 (-)
LOC111194848 NA coding downstream 768729 29862429 ~ 29866792 (-)
LOC111194847 NA coding downstream 777974 29854309 ~ 29857547 (-)
LOC111194846 NA coding downstream 787882 29839253 ~ 29847639 (-)
LOC111194845 NA coding downstream 816989 29817031 ~ 29818532 (-)
LOC111194850 NA coding upstream 16686 30657372 ~ 30658445 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding upstream 151106 30791792 ~ 30845637 (-)
fam110d LOC108426366 coding upstream 389793 31030479 ~ 31068087 (-)
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding upstream 918484 31559170 ~ 31583047 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 1556899 32197585 ~ 32318875 (-)
G161725 tmod3,LOC108264495,LOC108440576 non-coding downstream 237364 30394970 ~ 30398157 (-)
G161719 NA non-coding downstream 250713 30372082 ~ 30384808 (-)
G161717 NA non-coding downstream 264457 30353692 ~ 30371064 (-)
G161690 NA non-coding downstream 346376 30288838 ~ 30289145 (-)
G161674 NA non-coding downstream 463885 30170942 ~ 30171636 (-)
G161880 NA non-coding upstream 34713 30675399 ~ 30680028 (-)
G161871 NA non-coding upstream 49361 30690047 ~ 30695175 (-)
G161876 NA non-coding upstream 54848 30695534 ~ 30698973 (-)
G161875 NA non-coding upstream 143405 30784091 ~ 30785153 (-)
G161890 NA non-coding upstream 205036 30845722 ~ 30846175 (-)
G161711 NA other downstream 309663 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 1694134 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 1982574 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 3056603 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 3516268 27109707 ~ 27119253 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 58484 30699170 ~ 30781708 (-)
tap1 NA other upstream 2011282 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 3457242 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 3759977 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 5498217 36138903 ~ 36140897 (-)

Expression


Co-expression Network