CI01000012_12783994_12795809


Basic Information

Item Value
gene id CI01000012_12783994_12795809
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12783924 ~ 12796569 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12783994_12795809.mRNA
ATAACCTTGTCTGGTGTAAAATGACTTGCAATTTCATTGTCATAATAACGTGTAAAGTCTGTGCAAGGTTACCAAGAAAGGAGGTGAAGGAATCTGATGAATAAAGTGGTTTGTCTTGAATAAGCAGGAGAACATACTCATCTCCAGGATGCATTATGTGGATACATTTACAATGTCTGATAATTAAAAACATTCAGAAGCAAATTTAAACTAGGCCTGCTACAACTTCACCCTTTTTCCATGAATGTGGGAACCCTGTAACTAACGAGAAGTTACCAATAGTTTATCAATGGCTACACACTTTAAAATGTAAGAATTAATATAAATATAAAAGGTCCATTGGACAGCATATATCCTCACTCACTCACTCACACACTGGACACGCTTGGTGCAGAACATGATTGCTCAGCATTCCTTACATGTGTTCTGTTGAACTAATGACGTCGTCATTGGCTACAATGCATACGCATGTTACTTTTCTTCCTGAACAAGTGCGCACCTGAGTCCGAGTTGCTTTCACATTCAGTGTGAAAGCACCCCACAGTCTAATTGCTATTTTGGCATTATTAAATAAGAGAACCACTGAGATTTTTTTTTGTTTTTTTTTGGACATTATATGACAAATGCTGTCGATTGGCCTTAACTTACAGAACGTTTTGAACCCAGAAAACAAATTTATATCACACAACAAGGACTTTAAATTCAAAAACATATTTTCTTTGTCTCAGCTTGTGTCCTTCACCGATCTGGACCAGGTGGGATGACTCACAGCACAGATGTTCACCTTTCATTAAAAAGGTATGTAAATGAACTAAACAGGACAGACTTTCAGCTCATGGTCAAAACGTGCATGGGAGAAGATTTATTAGTGAAAAGATATAGAGGGTATGTTTACATAAACAGTTATAATAAAGTTACATTCTTAAAGGTGCACTATGCAGGATTTTCATCAGTTACTGTTTGTAAACACAACATTCAAACTTGGCCAGATAGAGAGAAAGATGACTACCCTGCAGAGGATAATCGATTTTCTCTAATCACATATTCAGCTGGAGAAAACATTTCCCTAGACATTGGCCCTTTGGGTAAATGGGCTTACCGTTTTCCACCTCTACATGTGATATTTGCAGATCCTTTGGTAGTTAAGGTGTCCACAGATGGCCAGTGTGATTACAAGCCTTTGGAACAGGCAGCTGTGGGAGAATTGAAAAGGATTTCTGCAAATCCCCACAGAGACCTTTATCTTACCAAATATTACAGAAAATTCATCTCCGATGCTGAAGACCTCAGTAAAAATGTTGAATCTTTGGACAAGACAATACTTCAAAAAATTTCTTATTTTGATAGCGAACGATTCAACGACTTTCAACACAAAAACATACTCCGTTGTGACGCCACCTACTGGACTAACGACAAACAGCAGGAAGCGTCACTATATCATTCTGAACGAATCTTTCACTGAACGTACTCAAATTACTCGAGTCACTCACAAAAATCGTCTCCACAACCAGTAAAAAAAGTGCTAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12783994_12795809.mRNA True 1532 mRNA 0.38 6 12783924 12796569

Neighbor

gene id symbol gene type direction distance location
CI01000012_12751670_12759821 ABCB10 coding downstream 24103 12751273 ~ 12759821 (-)
CI01000012_12745876_12748041 ACTA2, ACTC1B, MGC64484, MGC53823, ACTC1, MGC75582, ACT3, ACTA1, ACTC1A, ACTC1.L, ACTA1B, ACT2, ACTA1A coding downstream 34775 12745581 ~ 12749149 (-)
CI01000012_12741444_12744014 NA coding downstream 39490 12741314 ~ 12744434 (-)
CI01000012_12691707_12693855 PDCD2 coding downstream 90069 12691644 ~ 12693855 (-)
CI01000012_12681945_12685282 BRAFLDRAFT_86031 coding downstream 98642 12681826 ~ 12685282 (-)
CI01000012_12811846_12819195 NA coding upstream 15165 12811734 ~ 12819361 (-)
CI01000012_12872801_12891084 PGBD5 coding upstream 75293 12871862 ~ 12891084 (-)
CI01000012_12902396_12904687 AGT coding upstream 105592 12902161 ~ 12905621 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 coding upstream 157891 12954446 ~ 12957833 (-)
CI01000012_12960774_12964242 OPRM1 coding upstream 163132 12959701 ~ 12964929 (-)
G77149 NA non-coding downstream 2867 12780760 ~ 12781057 (-)
G77134 NA non-coding downstream 64737 12718946 ~ 12719187 (-)
G77128 NA non-coding downstream 78372 12705339 ~ 12705552 (-)
G76994 NA non-coding downstream 118273 12652366 ~ 12665651 (-)
G77014 NA non-coding downstream 718949 12064562 ~ 12064975 (-)
G76982 NA non-coding upstream 101786 12898355 ~ 12899359 (-)
G76975 NA non-coding upstream 103845 12900414 ~ 12901677 (-)
G77198 NA non-coding upstream 112060 12908629 ~ 12908909 (-)
G77200 NA non-coding upstream 116279 12912848 ~ 12913111 (-)
G77201 NA non-coding upstream 117129 12913698 ~ 12913923 (-)
CI01000012_12079581_12084139 NA other downstream 699664 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 731717 12046728 ~ 12052541 (-)
G75608 NA other downstream 2163053 10611915 ~ 10620871 (-)
G74982 NA other downstream 3207952 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 3381956 9398076 ~ 9402378 (-)
G77287 NA other upstream 822707 13619276 ~ 13633819 (-)

Expression


Co-expression Network