LOC111194749


Basic Information

Item Value
gene id LOC111194749
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1379727 ~ 1383644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651216.1
CTAGAGTGTGTGCACATTGCTGTGCTTGTAAGCTGACCGAAGCACATGTAAATGATCTGTCCTGTGGCTGCCTTATTCATTACAGGCAATAAAAACCTGCATTATCCCAGCCTGTGTCGTATCCTTCCCAACGAGGGCAGAGGAACATAAGGGGTCCGCATCAGAGGGGTCACACAGGTGATGATTTTAGGAGCGGAAATCATCCTGCTTCACCTCGGAGATCTTTGGTGGATTCCTGCTGTtgctgtaaatgacctgctcgtgcaccttcacagcgtgagtgagcagGATGAAGGATTATATGTGAAGTGCCTGGACTAGAGAGACAAATGAGGGCAGGGTGAGTTTAGCTAAACAAGATGCTGCTCCATCTCACTCCCACTGCAGCTCCTCAGCTTTCCAAACACTACAGTGACTCCAGGGACCAGATGGgacatgttatttttttatgggaCCAATATGCAACTTAATCACAACCAACAGGTATAAAACTGCTCAAAACACCTGTAACCCATAGAGATGAACACAAACAACCAAATATATGTAGCCCGTGGAGAAAGATAACATCCAggacacaatataaaaatatatgggttattttatttgcaaGTTACTTTCGGGTTGTAAAGAGTAACTTTCTTGTCTAGTTTTCTTTAGAGCTGagaagagttaaaaaaaa
>XR_002651217.1
CTAGAGTGTGTGCACATTGCTGTGCTTGTAAGCTGACCGAAGCACATGTAAATGATCTGTCCTGTGGCTGCCTTATTCATTACAGGCAATAAAAACCTGCATTATCCCAGCCTGTGTCGTATCCTTCCCAACGAGGGCAGAGGAACATAAGGGGTCCGCATCAGAGGGGTCACACAGGTGATGATTTTAGGAGCGGAAATCATCCTGCTTCACCTCGGAGATCTTTGGTGGATTCCTGCTGTtgctgtaaatgacctgctcgtgcaccttcacagcgtgagtgagcagGATGAAGGATTATATGTGAAGTGCCTGGACTAGAGAGACAAATGAGGGCAGGccaaTCTCTGCTTTTCCCAGGAGAAACAAAATGGCCTCAGGTAAGCAAATGGGAACTAAAATCACTGACAAAGCCAATCCATTAAAGGGACAGCAATCTATTAAccagtgtttaaataaatacacagaaaacaagtttttaCAAGTTTTTATCCTTTTACatgtcttaaaaataaatgtacatatttaatttaatctttctttaataaacaaaaagaaaacttttattGCCACCTGTCTACATATATTATACCGTGTAATCGATTTGTGAAAAGTGTAAGTATTTTTTAGGTATTTCTACAAGTatgtttagtttattatattaagtttattcttaaacttaaaattgttaaacaaaccaaaatactatggCTCTTACTGTATCTTGGATGCTGTTAGCTTaaagtttctgaggctgataactctgatgaacttatccttgCACAACAGAGAGaactcttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651216.1 False 679 lncRNA 0.44 5 1379727 1383041
XR_002651217.1 True 802 lncRNA 0.38 6 1379727 1383644

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 427247 927719 ~ 952480 (+)
sertad3 NA coding upstream 661022 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 666706 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 697824 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 815951 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 31763 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 183471 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 269010 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 279334 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 308954 1692598 ~ 1905714 (+)
G155579 NA non-coding upstream 7815 1365000 ~ 1371912 (+)
G155573 polr2i,rpb9 non-coding upstream 17833 1357950 ~ 1361894 (+)
G155490 NA non-coding upstream 33723 1297295 ~ 1346004 (+)
G155507 NA non-coding upstream 41004 1249984 ~ 1338723 (+)
G155514 NA non-coding upstream 116044 1262053 ~ 1263683 (+)
G155576 NA non-coding downstream 86497 1470141 ~ 1471422 (+)
G155669 NA non-coding downstream 213460 1597104 ~ 1597615 (+)
G155677 NA non-coding downstream 248221 1631865 ~ 1648626 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding downstream 260315 1643959 ~ 1650935 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 294901 1678545 ~ 1680366 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 101465 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 156377 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 272935 1103450 ~ 1106792 (+)
G155206 NA other upstream 1226464 149347 ~ 153263 (+)
G155776 NA other downstream 1354717 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2227374 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2545687 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3192024 4575668 ~ 4637290 (+)
G156188 NA other downstream 3773510 5157154 ~ 5157400 (+)

Expression


Co-expression Network