LOC111194771


Basic Information

Item Value
gene id LOC111194771
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16817235 ~ 16821091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651249.1
atcgcgccctgccataggaaatgaatggtcgcctgtcgctttccagtgtgaacgcagggttaacGCGGCACCTGATTGGCAAACAGAAATTTCacgtctttcttcagagaagaCTCTGTTGATTCTGCGCATGTGCACTAGTAAACTGTAAACCGAGCCAAACCTTTAAATAAAGCGTTAAACTCGATATTTTCAGCACCTCtttgacaaaaatgaaaagGATTACTGTAAAATGGACTGATGGATTTACTTATTTGGAGCGATTTTGAAGCAGCAGGGAGAGATGGTGAATTTCTGAAATCTCGTGCTGCTGAGCTGCATTGCATCCAACCATTCCGAAGCCCCTCGCTGCAGCTGGAGGCGCGTAACCAACTTTCTCACTGGCGCAGTTCTGGAGTTTGACGTGTCGTGCAGGTCACGCATCAAATACAAACCAATCGAAGGTCTGAATGGATATCTTCACAGGGAACAGTGCCATGGAGATAATATCAAGCCAAACCTATCCTCCTGCGTGTGAGAAGggataatctttttttattattgtaccGTCCACGAGGTCATTTCGAGACTAATTTGTTCATTATTTCTCTCACACTACTGTCCCTACTGAATGCAGCAGGATTGGGCCCTAAATATTTCCTTTGTGATAAATGATGAGAAGAGCAGAATTCTGAATTTCTTAATGTcaaacatgaaattaaattcacCTCGGACCCACACTGCTATTCCTCTCTGATGTGCTTTTGGTAAGATGGAAATAATTTGAATCCTAAAATGTGGTTGCACAGTCATGCCCTAACAACCAAATTTCCCCTTAAACATCCAGCCTAATTTACATACACTTTCCTCTACCCAGACACATCATCTGAAAAGAAGAAGTATGCctaaaaaagaaacactgcatcAACGTTTTACTTCAGCTATGAATGCTTCAAAAAACAAGCATAATTTTGATTCTATTTGAGTAACATATACCCAACGAAAAACACTACTAAATGAGACTGACTGTTTTTATCATGTATTTATTCTACATTCAGCTAACTTCACAGTAAAACCTGGAAAGTTTAAATATctacttttttctatttttactaaTTCAGGTTTGAAgggtgttcagtgttggagtcaTTTGAGTTGAACATTTCAGTgctaacccaaataaacaaattcaaaatgatttaa

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651249.1 True 1182 lncRNA 0.39 3 16817235 16821091

Neighbor

gene id symbol gene type direction distance location
pllp pllp coding upstream 44235 16764032 ~ 16773000 (+)
trnal-cag_11 NA coding upstream 53627 16763526 ~ 16763608 (+)
n4bp1 NA coding upstream 286640 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 305926 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 532191 16274679 ~ 16285044 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 21570 16842661 ~ 16852459 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 38801 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 100278 16921369 ~ 16931362 (+)
LOC107197433 NA coding downstream 474116 17295207 ~ 17301682 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding downstream 604127 17425218 ~ 17447793 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding upstream 40017 16774680 ~ 16777218 (+)
G158818 NA non-coding upstream 78358 16738472 ~ 16738877 (+)
G158823 aars non-coding upstream 87120 16728456 ~ 16730115 (+)
G158793 NA non-coding upstream 228763 16587927 ~ 16588472 (+)
G158786 lonp2 non-coding upstream 241861 16574684 ~ 16575374 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding downstream 15622 16836713 ~ 16840357 (+)
G158855 NA non-coding downstream 59427 16880518 ~ 16880840 (+)
G158873 NA non-coding downstream 118437 16939528 ~ 16939732 (+)
G158874 megf11 non-coding downstream 127373 16948464 ~ 16948756 (+)
G158875 NA non-coding downstream 167679 16988770 ~ 16989051 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 18835 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 92026 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 245777 16542878 ~ 16571458 (+)
G158779 NA other upstream 437412 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 1041069 15775424 ~ 15776166 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 280521 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 356584 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 506009 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 1150005 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1704437 18525528 ~ 18576437 (+)

Expression


Co-expression Network