LOC103038177


Basic Information

Item Value
gene id LOC103038177
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19607416 ~ 19665139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651254.1
CTGTCGCCCAGCTCCCTCCCGGCAGAAAGACCGGGGGACAAGAGGAGGCAGAGAGTGTGAAGGAAAGCCTCACAGGGGCGAGAAGGAAGCCGTCCAAAGCCAGCTGGTCTGGCTTTGAGGAAAGCAGAAGAAAGCGAAACACGGGGGGGGACGACaaagaacgagagagacagataaagagagagaaagaaagcgaatgaaagaagaaagagagaagtgcTAAGGTTAAAGGAAGTGTCCTTGTGGGAAAGGGAAGAAGTGGCCCAGCtgatagaagaagaagaagacgagtGAGGCACGTGGACGAGGCCTTCACAGCAGGTTCTGTGAAGGCGGGAATTGGCATCAGCAGCTCAGTTGATGCAGGAACATTTCTTTCCCAAGGAGGAGCAAGCAGCAGGAAGCTCAGAGTGAAGCACTGAGAAAGGAAGGAAGAGCGAGAGCCCGAGTTGAGCTGGATATTGTGGGCCGGAACGAAGGCTTATCAGCGATTTGATCACTGGGTAGTGGTGCGGACACGTcaagagaaaggcagagagagaga

Function

GO:

id name namespace
GO:0055001 muscle cell development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651254.1 True 544 lncRNA 0.53 3 19607416 19665139

Neighbor

gene id symbol gene type direction distance location
LOC111194775 NA coding upstream 86863 19515607 ~ 19520553 (+)
fan1 NA coding upstream 95191 19500023 ~ 19512225 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding upstream 110841 19451775 ~ 19496575 (+)
gnao1 gnao1,gnao1a,LOC108264367,LOC107715606,LOC107660763,LOC102196435,LOC100693875,LOC108249535 coding upstream 174291 19317373 ~ 19433125 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding upstream 349382 19253357 ~ 19258034 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding downstream 1485 19666624 ~ 19772127 (+)
LOC103025942 NA coding downstream 110200 19775339 ~ 19847558 (+)
arrdc4 NA coding downstream 1001105 20666244 ~ 20674227 (+)
lysmd4 NA coding downstream 1080429 20745568 ~ 20751796 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 1321485 20986624 ~ 21007290 (+)
G159585 NA non-coding upstream 20444 19586448 ~ 19586972 (+)
G159583 NA non-coding upstream 21579 19585408 ~ 19585837 (+)
G159579 NA non-coding upstream 43450 19563749 ~ 19563966 (+)
G159480 NA non-coding upstream 345090 19259296 ~ 19262326 (+)
G159398 NA non-coding upstream 797346 18786541 ~ 18810070 (+)
LOC111194777 NA non-coding downstream 480563 20145702 ~ 20162076 (+)
G159663 NA non-coding downstream 540925 20206064 ~ 20207105 (+)
G159662 NA non-coding downstream 542088 20207227 ~ 20213526 (+)
G159677 NA non-coding downstream 591368 20256507 ~ 20257213 (+)
G159705 NA non-coding downstream 783319 20448458 ~ 20448783 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 1030979 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 1621512 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 2235210 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 2418165 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 2435188 17101612 ~ 17172228 (+)
G159666 NA other downstream 520377 20185516 ~ 20186919 (+)
G159728 NA other downstream 1071459 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 1344163 21009302 ~ 21011794 (+)
fam174b NA other downstream 1395517 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 2482705 22147844 ~ 22152785 (+)

Expression


Co-expression Network