LOC111194777


Basic Information

Item Value
gene id LOC111194777
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20145702 ~ 20162076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651256.1
GTAAGCTTTCCCACGAAGCCGTGTTTCCCTCAAACAAGACTTCCACTTGaagctagtgtttttttttctctgaaacGGGCTTCATCTCTacactgactgaccttcagGCAGCTTCGCGGGCAGTAACAGATTCTTTATAGGGGTTGGATTTTTCTTCTCTACACATTTTACTGCTGAGTGACCTCCTCGGTCAACGTAACCTAGCCGTGACCTCTGACCGGTGCAATTCACCATGCGTCTCCAGTCCAGCGACCAGCAGCAACTCCCCCATGATCACTGGAAATGTCACTGAGGTGGTGTCCCTTGCCCTCTGAACTATGGGCCGCTCACGTCCTGCACAAATACATCACTTTCACCAAAGCATCTGTCATCAAAGCACTCTCATTTACTTTccattttctgtaaatgctATTCTATTAAGAATGCTTCTTATTAGAACGGTCAGAACAAATATAGGTCGAAGTGAAAAGTTTGATTAAAAGTGGAAAAGATGACAAAATCAAACCGACACAAAGTcttttctctgcatattttattatcttgTCCTGGACAGTGATCATTTGTCCAAAATAAATAGTAGCTGTGAAGAATATCCAATGATTAATGCtagtctacacacacacacacacttaagtTTCAATAATGCTCTAATAAAAACATGACTCAAGGACACATTTTATCACATGGACtgaagggaaaaaagaaaagaaaatgcagGAGAGAGCTTTCATctaaagatttttttccccctccaaCCTTAAAAACATGTTTCAACAGGCCCTGACATACGCAAGATTGATCCTTGAAAATGACCCAATCCAAACAGAGGAGCTGATAATGGTTTGAAAAGATGTCTCTATTATGGGATAGTATTTCATGTTGGAGAGAAATTGTTCCTAATGAGCCTTGTTCTAAAGGCCTGCAGGCCCTGCCTCTCCCTCCCTTTACTCTCCAGACCTCCAGGGGTTAGTGTCTGTGCGTCAGGCCCCCATTGTTGTCTACCGGCGGATAATGTCCTTATTAATTGTACCTCTTTGTAAGGTGTCAGCTGCAGCCTTCGATTGAGACGGATGGGTCCTCTGGAGTCTGCTCCCGAGCCCTCCTCTGCTGGCCTATCTTTAGACAGCACACAGGTGCATCATTTCTCATCCAGCAGCTTCAGTGTTGGGCCTAAAGCATTCTCTGATATACAGTATGACCCCAAAAAGTGTCAAAGGAGGCAAAAGAAACAATgtcttttagaaaataaaaatacatcatTTTAAAGAAGACAAATTGCGAATAAAATGGTTCCCTTATTTTCACTTGTTTACTAACCAAAGTCCcagatacaaatatataaaacatacagtaaatatacatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651256.1 True 1363 lncRNA 0.42 3 20145702 20162076

Neighbor

gene id symbol gene type direction distance location
LOC103025942 NA coding upstream 298144 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 373575 19666624 ~ 19772127 (+)
LOC111194775 NA coding upstream 625149 19515607 ~ 19520553 (+)
fan1 NA coding upstream 633477 19500023 ~ 19512225 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding upstream 649127 19451775 ~ 19496575 (+)
arrdc4 NA coding downstream 504168 20666244 ~ 20674227 (+)
lysmd4 NA coding downstream 583492 20745568 ~ 20751796 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 824548 20986624 ~ 21007290 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 1089628 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 1193043 21355119 ~ 21371584 (+)
LOC103038177 NA non-coding upstream 480563 19607416 ~ 19665139 (+)
G159588 NA non-coding upstream 515030 19627846 ~ 19630672 (+)
G159585 NA non-coding upstream 558730 19586448 ~ 19586972 (+)
G159583 NA non-coding upstream 559865 19585408 ~ 19585837 (+)
G159579 NA non-coding upstream 581736 19563749 ~ 19563966 (+)
G159663 NA non-coding downstream 43988 20206064 ~ 20207105 (+)
G159662 NA non-coding downstream 45151 20207227 ~ 20213526 (+)
G159677 NA non-coding downstream 94431 20256507 ~ 20257213 (+)
G159705 NA non-coding downstream 286382 20448458 ~ 20448783 (+)
G159706 NA non-coding downstream 293735 20455811 ~ 20456164 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 1569265 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 2159798 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 2773496 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 2956451 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 2973474 17101612 ~ 17172228 (+)
G159666 NA other downstream 23440 20185516 ~ 20186919 (+)
G159728 NA other downstream 574522 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 847226 21009302 ~ 21011794 (+)
fam174b NA other downstream 898580 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1985768 22147844 ~ 22152785 (+)

Expression


Co-expression Network