LOC111194785


Basic Information

Item Value
gene id LOC111194785
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27235857 ~ 27236813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651270.1
tgcgtccgaaatcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaatgaataaaaaaaataaataaagctactttaaagacttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651270.1 True 373 lncRNA 0.47 2 27235857 27236813

Neighbor

gene id symbol gene type direction distance location
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 31947 27202494 ~ 27203910 (+)
LOC103022175 LOC103022175,LOC108437972 coding upstream 132263 27088875 ~ 27103594 (+)
veph1 veph1,LOC106613251 coding upstream 183658 26853880 ~ 27052199 (+)
LOC103030887 NA coding upstream 446104 26756582 ~ 26789753 (+)
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding upstream 917469 26193982 ~ 26318388 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding downstream 186697 27423510 ~ 27429781 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding downstream 525578 27762391 ~ 27778466 (+)
plch1 plch1 coding downstream 568250 27805063 ~ 27965690 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding downstream 732245 27969058 ~ 27977682 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 834678 28071491 ~ 28077732 (+)
G160994 NA non-coding upstream 62514 27173044 ~ 27173343 (+)
G160993 NA non-coding upstream 63919 27171643 ~ 27171938 (+)
G160921 NA non-coding upstream 318212 26917268 ~ 26917645 (+)
G160913 NA non-coding upstream 369450 26866125 ~ 26866407 (+)
G160869 NA non-coding upstream 421788 26769564 ~ 26814069 (+)
G161017 NA non-coding downstream 101314 27338127 ~ 27339174 (+)
G161060 NA non-coding downstream 164148 27400961 ~ 27401187 (+)
G161079 NA non-coding downstream 349716 27586529 ~ 27586770 (+)
G161080 NA non-coding downstream 366046 27602859 ~ 27627422 (+)
G161115 NA non-coding downstream 544041 27780854 ~ 27783189 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 116593 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 328230 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 480544 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 890175 26323820 ~ 26345682 (+)
G160306 NA other upstream 3116032 24119129 ~ 24119825 (+)
c18h3orf33 NA other downstream 548083 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 1385315 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 1508883 28745696 ~ 28759007 (+)
G161331 NA other downstream 1834007 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 3116873 30353686 ~ 30414212 (+)

Expression


Co-expression Network