LOC111194802


Basic Information

Item Value
gene id LOC111194802
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28643321 ~ 28652309 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651278.1
TGTGCTGGGAGAGAAGGTCGTGAATCAGCTCTTAAACGgcgctgggtgtttgttttgtttctgaacgAGCAGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCAAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt
>XR_002651279.1
GCAGGAGTCCAAAGCCTCGATGTGTTTTATGGGGAACAGTTATTAATATTGGGTCAAATAATCCAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGTTTCCCCTTTACTCTGTTTTCATTTAAAGCCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCACGGCGGAGCTCTGTAAATCCCGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCAAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt
>XR_002651280.1
CGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCAAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt
>XR_002651281.1
AGGAGTCCAAAGCCTCGATGTGTTTTATGGGGAACAGTTATTAATATTGGGTCAAATAATCCAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGTTTCCCCTTTACTCTGTTTTCATTTAAAGCCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCACGGCGGAGCTCTGTAAATCCCGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCAAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651278.1 False 607 lncRNA 0.48 4 28649848 28652309
XR_002651279.1 True 795 lncRNA 0.48 5 28648505 28652309
XR_002651280.1 False 507 lncRNA 0.50 4 28643321 28652309
XR_002651281.1 False 724 lncRNA 0.49 4 28648507 28652309

Neighbor

gene id symbol gene type direction distance location
dhx36 dhx36 coding upstream 256904 28300719 ~ 28386417 (+)
gpr149 gpr149 coding upstream 360003 28255972 ~ 28283318 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding upstream 447607 28185750 ~ 28195714 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding upstream 458414 28180682 ~ 28184907 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding upstream 465335 28173610 ~ 28177986 (+)
arid3b LOC108439030,LOC108264089 coding downstream 116297 28768606 ~ 28859096 (+)
LOC103037946 LOC108439022 coding downstream 302408 28954717 ~ 28969395 (+)
LOC103022881 LOC108439021 coding downstream 365751 29018060 ~ 29063139 (+)
LOC103023184 NA coding downstream 481319 29133628 ~ 29143190 (+)
LOC103038575 LOC108439020 coding downstream 499987 29152296 ~ 29159185 (+)
G161243 NA non-coding upstream 249293 28366168 ~ 28394028 (+)
LOC111194734 NA non-coding upstream 608126 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 749844 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 860132 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 1015899 27602859 ~ 27627422 (+)
LOC111194803 NA non-coding downstream 243 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 15864 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 234133 28886442 ~ 28886800 (+)
G161312 NA non-coding downstream 234663 28886972 ~ 28889126 (+)
G161313 NA non-coding downstream 237061 28889370 ~ 28890244 (+)
G161292 rap2b,LOC107757383 other upstream 18536 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 846817 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1524057 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1735694 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1888008 26617262 ~ 26755313 (+)
fam219b fam219b other downstream 93387 28745696 ~ 28759007 (+)
G161331 NA other downstream 418511 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1701377 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2202249 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 2222729 30875038 ~ 30878327 (+)

Expression


Co-expression Network